Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01834 ATGTTTTCTTTTCTCGAACATCGGCCTGATCGGATTCGACGAGCGATGACCATGTTAGAGGACTCCTGTGTTGCTGGGAACGATGAAGCTTTTGGATTCGGGGATCCAAAGTTGCCACCAGGGTTCCGATTCCACCCAACTGATGAGGAACTCTTGCTCTATTATTCAAGAGGAAAATCTGTCACCGTCACTGCCGCTGTCCCAACTTCAACGCCATCGCCGAGACCGACCTCTACAAATGGGATCCCGAGGATTTGTCCGGTACACTACGTCAGGCAGTCCGTGTTGAAGAGCGGTGATAAGCAGTGGTACTTCTTCAACCGCAACGACCGGAAGTACCTGCACGGACGGGGAACCAACAGGGCTTGCATGTACGGCCACTGGAAGATAACGGGAAAGGATCGAAACATTCTTTGGAATTCCCGGGTTGTGGGCACCAAGAAAACCCTCATTTTCCACAAAGGCCGTGCTCCCAAAGACGAACGCACCGATTGGGTGATGCACGAGTATACCCTGACCAAGAAGAGCTTAAGAAATGCCCGGTCCCAGCTCAGGATTCTTATGTTCTTTGTAAGGTTTTCAAGAAGAGTGGATTCGGTCCCAAAAATGGCGACCACTATGGAGCACCATTCAGAGAAGAGGATTGGTCTAATCAATGCAATTATCCAGTCGATGTGA 678 0.5015 MFSFLEHRPDRIRRAMTMLEDSCVAGNDEAFGFGDPKLPPGFRFHPTDEELLLYYSRGKSVTVTAAVPTSTPSPRPTSTNGIPRICPVHYVRQSVLKSGDKQWYFFNRNDRKYLHGRGTNRACMYGHWKITGKDRNILWNSRVVGTKKTLIFHKGRAPKDERTDWVMHEYTLTKKSLRNARSQLRILMFFVRFSRRVDSVPKMATTMEHHSEKRIGLINAIIQSM* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01834 225 ProSiteProfiles NAC domain profile. 38 192 IPR003441 GO:0003677|GO:0006355
Eupl05g01834 225 Pfam No apical meristem (NAM) protein 39 172 IPR003441 GO:0003677|GO:0006355
Eupl05g01834 225 Gene3D NAC domain 47 191 IPR036093 GO:0003677|GO:0006355
Eupl05g01834 225 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 37 181 - -
Eupl05g01834 225 SUPERFAMILY NAC domain 30 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01834 Eupl-Chr5 43465156 43466012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01834 38 180 NAC Transcription Factor Family AT5G04410 50.350 2.74e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl05g01834 NAM 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01834 - - psom:113356631 159.844