Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01829 ATGGAAATGGAGAGTTCTCGTGGATCCATAGATAGGTTGAGAGAACTGGGTTTGAAGAAACCTAGATTGGGTGAGGAGGCCCAACGGGACCGAAGTTCGAACAGCGGCGGCGTTGATCGTGACCGGCCGTTTCCTCAGAGAGCCTCCGCTGGCGCAGGCCCGGGAACTGGACCGGTGCTTCCGAGGTTTAGAGCAAACGAGAGGGAGAGAGATGATTCTGTCCGAGGAGCCTATCAGCCGCAACATCACCAAGAGCTTGTCAGTCAGTATAAGAACGCTCTTGCGGAGCTGACCTTCAATTCGAAACCAATTATCACCAACCTGACGATTATCGCCGGTGAGAACCTTCACGTGGCGAAGTGGATTGCTTCCACTGTCTGTGCCAATATTCTCGAGGTTCCTAGTGAGCAAAAACTGCCGTCTCTGTATCTTCTTGATAGTATTGTAAAAAATATTGGGAGAGATTACATTAAGCACTTTGCTGCCCGGCTACCTGAGGTATTCTGCAAGGCATATAAACAGGTCGATTCTACAATACATCCTGGTATGCGACATCTTTTTGGGACTTGGAAAGGGGTGTTCCCCCCAGCTGCTCTTCAGATGATCCAGAAAGAGCTTGGTTTCGCACCTGTCATCAATGGTTCATCTTCTGGAACAACAACATCTAGGCCTGATTCCCAGTCACAACGACCACCACATAGCAATAGCATTCATGTAAATCCCAAGTATTTAGAGGCACAGCAGCGCTTTCAGCAGTCAAGTAGGGCAAAGGGAACCACAACCAATGACAATACTGGGACCATCGTTACCTCAGCTGAGGATGCAGAGAGGCCCAACGGAACCGCTATTATTGGGAGTGGAAGGCCATGGACAGATCTACCTGTTAAGATGCATAGCATTCAGCGTCGTCAAAGAGAAGAGTTAAGTGATCCTCTTTATGAGAACACCACTGGTGCAGGATATGAAGATTATGAATATGGTTCTGATCTTAAAAGGCAAATGGACATAGGAATTCGAAGAGCCAGCGAGAGAGTTACTGATCGAGAAGGAGTTGACAAGCCTTGGTATGGAGTGAGCAGCAACACTGCAGAAGCAGCGGTGGGTCAGAGGAATGGTTTTGATAGCCATCATGGATTTCCAAACTACCGAGCACCCAGATCTGCACAAGCCGTTGCTCAGCTGCAATCCACACAGAGCATTGCAAATAGAAGCAGCAGGGGGATGTCTAGGAACTGGAAGAACTCTGAGGAAGAGGAGTACATGTGGGACGATATGAACTCCAGATTGACAGATCATGGGGGGTCCGATAGCTCAAGGAAAGAGGATTGGACTCTTGATGATGAAGAAAAGCTGGAGTTTGAAGACCACCTTCCACAGCCTTGCGGTGAACGTGATATCGGGTTGAGTGTTAATAGAGAAACTTCCACTGATTCTCTATTCATAACACAGAGAGGACAAACTGCATTTGGGCATCGGACATCATCAAAGTGGCCATTGCAAGAGCCAGGCCCAGTGGATGGTTTGTCTCATACAGGCATAGCTTCAAGAATTTTAGGTCAGTCAGAAGGCCATCCTACTTCTCTCAGTAGCTTATCGACTAGCACGAGTTCATCTTTGGCCACAGCAGGACTTCAACCCAATATGGGGCCATTAGTTGGTGGCGCTTCAAGCTTTGGATCTTTGGTGAAAACATTATCGGGATCTGGAGTTTTTGTGCAACAACGGCAGGAGCCTCTGGGACCTGCATCACCATCTGGCCAGTCGTCCATGCACCAGCGTCCTCACTCACCTTCATCTTCAGCACTCCATCAGCACCAGCAATCACACACTTTGACTGAACAAGACCATTCACGAACTCAATCCATCCCTCAACCTGGTAAAAAAACATCTCAGCTTGCAGGAAAATTTAACCAAGCTCCTCTTATTCAAATAACTCGAGATACTTCCCCTATCATGCCTCAAAATCATATGCAGCCTGCCACTTTGCAAAATTTGCAGTCAACTCAGTCACAGCCCCCTCGACATTTACAGACTTCATCTCATTCAATCCCTATCCCACAGCTAAGTCATTGTATTCCTTTCTCACAGCAGCCACAGTCGGACCTGATACAATCTCAATCATCCGGTCAGCCCCAGAAGCCATTGCCTCAACCCCCAAATTTTGGAACTCCCCTGACAATGGGATCCTCTGCTTCAGGCCTCTCAGATAATCCTACGGCAGAGATCCCAGGACAGTCGAGCAAAGGTAGTTTGTTGGTTGCGATTATGAAGAGCGGACTACTCTTGAACAATTCAGTAACTGGTGGCTTCCCCAACCCGAGCTTTCAGGACTTGGGGCCATTGCCATCACATGTGAATCTTAAGCCCCCCCTGCCAAGCGGACCTCCTCCTACTCAGCTCGCTACATCCTCTCCAGCTTCTGTATTAAGCTCAGCTTCCCAAGGTAACACATTGGCTCTCACAGCATGCTCCAAGAGAACAGCGGTAATGCCTCCGCTGCCACCTGGTCCTCCACCTGCCTCCTCTCTTGTGGGTAGTACATCATCACAAACATCAAAGGTAGCTAATACTGTGCCAAACCCCTTTTCAAGTCTTTTGAGCTCATTAGTTACGAAGGGCTTGATATCTTCGCCAGCGACGGTGTTGCCCAATCTCACTGCTCCCCAGGTGCCTAGTGGGCTCGAGAGCCAGAGCCCAGGCCTAGCTACCAGTAGCTCGATGCCATTATCTCCAAATCCAGTTTCCTCGACCAGCCCTGCATTATATTCTGGGGAGGAGCTTCCTTTCTCAGAATCTACAGCTAAGAGCACTACCTTGTCTCAAGCCATGATGACAGAAACAAAGGACCTCATAGGCATTGATTTTAAGCCGGAAATCATCCGGGAATTACATTCTTCAGTGATCAGTGGCCTTTTTGAAGAACTTCCATACCGATGTAGTATATGTGGCCTTCGACTCAAACTTCAAGAACGACTTGATCAACACTTGGAGTGGCATGCTTCGAAGAAGCCTCAACCAAGCAGTTGCAATAGGGTTTCAAGGAGATGGTATGCGAGTTTGGGCAACTGGGTTGCAGGGAATGTGGGACCTTCATCTGGACCTATGTCCACTGCTTCTGTGGAAGGGTTGGTCAAGCCTGTGGAGAAAACTGAACTGGTGGTTCCTGCAGATGAAAGCCAGAGTGTATGTGTATTATGCGGGGAGCCGTTCGAAGATTTTTACAGTCATGAAAAGGACGAATGGATGTACAAAAGAGCGGTTTACATGACTATCCGAGCTGGAGAAGGCGAGATAGGAACTCTGGATGAGAATTCTGCTCAGGGTCCTATTGTGCATGCTAACTGTATATCACCAAGTTCACTTAATGACTTGGGACTGGCCAAGAGTGTTAAACTGGATCAAACAGATGGATGA 3414 0.483 MEMESSRGSIDRLRELGLKKPRLGEEAQRDRSSNSGGVDRDRPFPQRASAGAGPGTGPVLPRFRANERERDDSVRGAYQPQHHQELVSQYKNALAELTFNSKPIITNLTIIAGENLHVAKWIASTVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKHFAARLPEVFCKAYKQVDSTIHPGMRHLFGTWKGVFPPAALQMIQKELGFAPVINGSSSGTTTSRPDSQSQRPPHSNSIHVNPKYLEAQQRFQQSSRAKGTTTNDNTGTIVTSAEDAERPNGTAIIGSGRPWTDLPVKMHSIQRRQREELSDPLYENTTGAGYEDYEYGSDLKRQMDIGIRRASERVTDREGVDKPWYGVSSNTAEAAVGQRNGFDSHHGFPNYRAPRSAQAVAQLQSTQSIANRSSRGMSRNWKNSEEEEYMWDDMNSRLTDHGGSDSSRKEDWTLDDEEKLEFEDHLPQPCGERDIGLSVNRETSTDSLFITQRGQTAFGHRTSSKWPLQEPGPVDGLSHTGIASRILGQSEGHPTSLSSLSTSTSSSLATAGLQPNMGPLVGGASSFGSLVKTLSGSGVFVQQRQEPLGPASPSGQSSMHQRPHSPSSSALHQHQQSHTLTEQDHSRTQSIPQPGKKTSQLAGKFNQAPLIQITRDTSPIMPQNHMQPATLQNLQSTQSQPPRHLQTSSHSIPIPQLSHCIPFSQQPQSDLIQSQSSGQPQKPLPQPPNFGTPLTMGSSASGLSDNPTAEIPGQSSKGSLLVAIMKSGLLLNNSVTGGFPNPSFQDLGPLPSHVNLKPPLPSGPPPTQLATSSPASVLSSASQGNTLALTACSKRTAVMPPLPPGPPPASSLVGSTSSQTSKVANTVPNPFSSLLSSLVTKGLISSPATVLPNLTAPQVPSGLESQSPGLATSSSMPLSPNPVSSTSPALYSGEELPFSESTAKSTTLSQAMMTETKDLIGIDFKPEIIRELHSSVISGLFEELPYRCSICGLRLKLQERLDQHLEWHASKKPQPSSCNRVSRRWYASLGNWVAGNVGPSSGPMSTASVEGLVKPVEKTELVVPADESQSVCVLCGEPFEDFYSHEKDEWMYKRAVYMTIRAGEGEIGTLDENSAQGPIVHANCISPSSLNDLGLAKSVKLDQTDG* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 1 37 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 576 634 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 63 78 - -
Eupl05g01829 1137 ProSitePatterns Zinc finger C2H2 type domain signature. 979 999 IPR013087 -
Eupl05g01829 1137 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 762 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 490 542 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 785 799 - -
Eupl05g01829 1137 SMART 558neu5 85 207 IPR006569 -
Eupl05g01829 1137 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 888 926 - -
Eupl05g01829 1137 ProSiteProfiles Zinc finger C2H2 type domain profile. 977 1004 IPR013087 -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 514 542 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 664 711 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 828 853 - -
Eupl05g01829 1137 Pfam CID domain 91 200 IPR006569 -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 664 745 - -
Eupl05g01829 1137 SUPERFAMILY ENTH/VHS domain 82 209 IPR008942 -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 722 745 - -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 1 80 - -
Eupl05g01829 1137 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 773 812 - -
Eupl05g01829 1137 Gene3D - 76 207 IPR008942 -
Eupl05g01829 1137 CDD CID_Pcf11 87 206 IPR047415 -
Eupl05g01829 1137 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01829 Eupl-Chr5 43380731 43389422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01829 59 429 C2H2 Transcription Factor Family AT4G04885 36.267 5.65e-53 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01829 K14400 - nnu:104587695 1228