Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01827 ATGAATCCCGGAGATAAATCCTACTTTCAACCGACCAAATCTCCTCCTTCATCTTCATCTCCTCCAACTCCTCCAACTGTTTTAGATTGCAAGGGGTTCTCTGCAGCCAAAACCTCTGCTGTTCCATTGGAGTCTCGAATCAGCTCTCCGGGTGAAAAATTAGGGTTTCCAGCGATGAAAACGCTGGTATCGGTATCTCCTTCTTCGGCTGAGAAAGCTTCGTTTTCTATGTTCATGGAATCTAAAGGTAGCTCTTTAGGGGAAGGTTCGGGTTTTTCTGGCTCGTCTTCTTCTTCCCCTTCTCCGATTACTGCTATGAAACCCTCTTCTTCTAGAGAAAATATCTCATTTTTATCGTCTGCTTGGTTGCCGACTGAGACTGGAGGAGCTGGAGGAGGATTTATTCCGAGTGGAGATCCAGGGTTGCTGGTAATGAGCGAGGGAGAGAATACAGGGGTTCCACAGCCCCTTGAATGCCTACAAGGCATTCCGATTCCACCATTCCTTTTGAAGACTTACGATCTGGTTGATGATCCCTCATTGGATCCGGTGATCTCATGGGGACCCAGCGGTGAGACATTCGTAGTTTGGGACCCTGTGGAGTTCGCAAAGGGTGTTCTTCCCCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTAAATACTTATGGGTTTCGCAAGGTTGACACTGATCGATGGGTATTTGCCAATGAAGATTTCTTGCGGGGGAAGAGGCATTTGTTGAAGAACATTCATAGGCGCAAGTCGCCTCAAGGCCAGCAGATAGGGAGCTATGGTGGGTCTTCTGGTGAAACAGGGACGTCCGGAGTGGAAAGTGAGATAGAAACACTGAGAAAGGACAAGAATTTGTTGATGCAGGAGGTTGTAAAATTGCAGCAGGAACACCACAGGACAGCTCACCAGGTAGGGACAATGAAACAGCGTCTCCAGGCCGCAGAGCAGAGACAGAAGCAGATGGTCTCATTCTTGGCCAAAGTACTTCAGAACCCTGTGTTTTTGGTCCGTCTTCAGCAAAACAAGGAGCAGAAAGAGATTGCTTCTCCAAGGATGAAAAGAAAGTTTGTCAAGCAGCAGCAACTTGATCAGAGTAAATCAGGTTCATCCATGGAAGGGCAGATTGTGAAGTATAAACCTGATTTGGGCGACCTTGCTACATCTTTGGCAATGCAAGATTTAGAACCTATGCCACAACTTCCCGATTATCTCTTACAAGACATGGTGGACAGACTAGGACTTTGTGAAGCAGGCATGCAGGCTCAGATTGGGGACGTTGCGTTGGGCAATTTAGGGCAGGAACTTGTGGGGCCCTCAGGTCAAGTGGGAGTGGGGATGTTGAGCTTGGGATCTCTGGGATCTGAAGGTGCCTTCTTCAAAGGAAAGAATGAAGTAAGCCCCCAACCAGAAGTTGCTCCTGAATATGTTGTCTCTTTCCCAGAGGATTTGGAAAAGGAGAAGACATTTCCAGACGTTATGTCCCAGGGAGTTGAAAGCATCATTAAACAAGATGATATTTGGAACATGGGTTTCGATACCAGTGTCAGTCTGGCTGGTTCTAGCCATGATGTCTGGGGTAATCTGGTCAATTCTGACGTTCAAGGGCTGGAAGTCACAGGTGGATTATCAAATTTGTGGGACCTGGGGTTGCAGCAAGCAGTGGAATGTTTGGGAATCGATCAGTGGCCTGGTGATGAGTCCTCTTTTGACGATCTTGAAAGCCAAGCAGGACAGATAGAAGATGACCATTCTAAGAATATGGGTGCTTAG 1794 0.4727 MNPGDKSYFQPTKSPPSSSSPPTPPTVLDCKGFSAAKTSAVPLESRISSPGEKLGFPAMKTLVSVSPSSAEKASFSMFMESKGSSLGEGSGFSGSSSSSPSPITAMKPSSSRENISFLSSAWLPTETGGAGGGFIPSGDPGLLVMSEGENTGVPQPLECLQGIPIPPFLLKTYDLVDDPSLDPVISWGPSGETFVVWDPVEFAKGVLPRNFKHNNFSSFVRQLNTYGFRKVDTDRWVFANEDFLRGKRHLLKNIHRRKSPQGQQIGSYGGSSGETGTSGVESEIETLRKDKNLLMQEVVKLQQEHHRTAHQVGTMKQRLQAAEQRQKQMVSFLAKVLQNPVFLVRLQQNKEQKEIASPRMKRKFVKQQQLDQSKSGSSMEGQIVKYKPDLGDLATSLAMQDLEPMPQLPDYLLQDMVDRLGLCEAGMQAQIGDVALGNLGQELVGPSGQVGVGMLSLGSLGSEGAFFKGKNEVSPQPEVAPEYVVSFPEDLEKEKTFPDVMSQGVESIIKQDDIWNMGFDTSVSLAGSSHDVWGNLVNSDVQGLEVTGGLSNLWDLGLQQAVECLGIDQWPGDESSFDDLESQAGQIEDDHSKNMGA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01827 597 PRINTS Heat shock factor (HSF) domain signature 206 218 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 PRINTS Heat shock factor (HSF) domain signature 168 191 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 PRINTS Heat shock factor (HSF) domain signature 219 231 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 MobiDBLite consensus disorder prediction 573 597 - -
Eupl05g01827 597 MobiDBLite consensus disorder prediction 255 282 - -
Eupl05g01827 597 SUPERFAMILY "Winged helix" DNA-binding domain 164 257 IPR036390 -
Eupl05g01827 597 SMART hsfneu3 164 257 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 Coils Coil 284 304 - -
Eupl05g01827 597 FunFam Heat shock transcription factor 1 161 258 - -
Eupl05g01827 597 Pfam HSF-type DNA-binding 168 257 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 MobiDBLite consensus disorder prediction 86 109 - -
Eupl05g01827 597 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 154 378 IPR027725 -
Eupl05g01827 597 MobiDBLite consensus disorder prediction 257 282 - -
Eupl05g01827 597 MobiDBLite consensus disorder prediction 1 30 - -
Eupl05g01827 597 ProSitePatterns HSF-type DNA-binding domain signature. 207 231 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl05g01827 597 Gene3D - 162 258 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01827 Eupl-Chr5 43370708 43373578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01827 98 538 HSF AT5G03720 40.674 5.63e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Eupl05g01827 HSF_DNA-bind 2.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01827 K09419 - msin:131234451 545.043