Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01818 ATGGAGTTTTGGGGTGTTGAAGTCAAATCTGGAGAGCCCCTTAAGGTCGAACCTGATGAAAAGATTTTGCATCTCTCACTGGCATCCCTTGGTGAGATAAAGAAGGACAAAGGAAATGAATCAATTCCCATCTTTGTGAAGATTGGTGGTCAAAAGCTTATTCTGGGAACCCTCTCACCGGAAAAGTGCACTCATATATCTTTTGATTTGTTGTTTGAGAAAGAATTTGAACTATCCCACAACTGGAAAAATGGGAGCGTATACTTCTGTGGTTACAAAACTGTCTGGGAGGGCGATGTCACGTCCGACGATTTTACTGATTCTGATTTTGGAGAGGATCTTCCACTCGATGCTGCGGAGAATGGAAAACCTGAGCCTAAGGATAAGAAGTCAAAGCCTACTACAGATAAGGCTAATGCTTCCAAGCCTGATTCTTCTGCAGCTAAGCCAAAGGTGAAAGTTGTTAAACCAAACAAGGAGGATAAATTTAAGGAGGTTGGTGATGACGATGATGATAGTGACGATGATGTAGATGAGGATGATTCTGAGGAAGATGAATCTGATGATGAGGACATGCTTGTTTTTGGGAATGAAAGCGATGATGATGAAGAAAGCTCTGATGAGGAAGATGAAGCTACACCTAAGAAGGCCAAGTCAGGCAAGAAGAGACCTGCAGAATCTGCCACTAAGACGCCTGTTGCTGAGAAGAAGGCTAAATTTGTTACACCACAGAAGACAGGTACTGATCTCAAAAAGGGTGGTGGTCATACTGCGACCCCCCACCCCTCAAAGCAGGCTGGGAAGAGCCCTGCAAACAGTGACAAGGCAAAGCAGCAGACTCCAAAATCCAGTCAAGTCATGTGCAAGACCTGTAGCAAGACATTCAACACAGATAATGCTCTGCAATCTCATACGAAGGCAAAGCATAGTGTTGGCAAGTGA 942 0.4416 MEFWGVEVKSGEPLKVEPDEKILHLSLASLGEIKKDKGNESIPIFVKIGGQKLILGTLSPEKCTHISFDLLFEKEFELSHNWKNGSVYFCGYKTVWEGDVTSDDFTDSDFGEDLPLDAAENGKPEPKDKKSKPTTDKANASKPDSSAAKPKVKVVKPNKEDKFKEVGDDDDDSDDDVDEDDSEEDESDDEDMLVFGNESDDDEESSDEEDEATPKKAKSGKKRPAESATKTPVAEKKAKFVTPQKTGTDLKKGGGHTATPHPSKQAGKSPANSDKAKQQTPKSSQVMCKTCSKTFNTDNALQSHTKAKHSVGK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01818 313 ProSitePatterns Zinc finger C2H2 type domain signature. 288 309 IPR013087 -
Eupl05g01818 313 Gene3D Nucleoplasmin core domain 1 97 - -
Eupl05g01818 313 MobiDBLite consensus disorder prediction 262 287 - -
Eupl05g01818 313 MobiDBLite consensus disorder prediction 116 137 - -
Eupl05g01818 313 MobiDBLite consensus disorder prediction 210 233 - -
Eupl05g01818 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 286 313 IPR013087 -
Eupl05g01818 313 MobiDBLite consensus disorder prediction 106 287 - -
Eupl05g01818 313 FunFam Histone deacetylase HDT1 1 97 - -
Eupl05g01818 313 SUPERFAMILY beta-beta-alpha zinc fingers 279 308 IPR036236 -
Eupl05g01818 313 Pfam Zinc-finger double-stranded RNA-binding 287 306 IPR022755 -
Eupl05g01818 313 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Eupl05g01818 313 MobiDBLite consensus disorder prediction 167 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01818 Eupl-Chr5 43154646 43165656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01818 1 312 C2H2 Transcription Factor Family AT5G03740 40.867 1.04e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01818 NPL 1.2e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01818 - - ming:122088849 354.369