Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01807 ATGGAAGGGAGGGAGAGTACGGTTTCTGGGTCTCCCACAAACACAGAGAATGAGTCTCCGGTAAGCGGAGTGGTTCCACAGGCGATGAGCATGGCTATAAACATGAGCATGGAGAGAAGCATTGGGGGAGAAGGAGAAGGAGGAGTGATGGATATGTTGGCCAGGAAAAAAAGAGGGAGGCCGAGGAAATACGGTTCCGATGGCAACATGGCATTAGCGCTCTCAACGGGCTTTTCTTCGTCCCCTTCCGATTTCTCTCCCAAGCGGAGTAGAGGGCGGCCACCAGGTTCTGGAAAACGGCAATTACTTGCCTCTTTAGGCGAGTGGGTTGCCAACTCGGCAGGAGGAAACTTCACACCGCATGTGGTGACTATACATACAGGGGAGGATGTTGCGGCAAAGATATTTTCATTTTCCCAAAAGGGTCCTCGGGCCATTTGCGTTCTCTCTGCCAATGGAGCTATTTCGAATGTTACTATTCGCCAGCCTGGTTCGTCTGGTGGTATTTTGACATATGAGGGCCGCTTCGAGATACTGTCTTTGTCTGGGTCCTTCACGGTCACTAATACTGGTGGTGTACGTAGCAGAACTGGTGGGTTAAGTGTCTCACTGGCTGGCCCTGATGGTCGTGTTATTGGAGGAGGGGTTGCAGGTTTATTAACGGCTGCTAGCCCAATTCAAGTTGTGGTGGGGAGTTTCATGCCAAACAGTCACAAGGCGCATAGAAGGAAGCAGCATCTCGTACCTTCAATGGCTTCGGCGATTCCAGGGGCTGCAGATACAGTGACAGTGGCGAGACCCATCTCTCAAGCAACACCTGATGATGATACCTGCGCGACCCCGACATCTACATTACCAGAACAAAACCAAGGAGATGCCGAGAATAGCACAAGCAGTAATCAGAACCCGAACTCCACTTCTTTCCGCAATGTTGGTTGGCATGGCTTGCAGTCCATGTCAGATCAGAGACCATCTCCTGACATTAACGTGTGCGTGCCTGGCGAATAA 1008 0.5129 MEGRESTVSGSPTNTENESPVSGVVPQAMSMAINMSMERSIGGEGEGGVMDMLARKKRGRPRKYGSDGNMALALSTGFSSSPSDFSPKRSRGRPPGSGKRQLLASLGEWVANSAGGNFTPHVVTIHTGEDVAAKIFSFSQKGPRAICVLSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTNTGGVRSRTGGLSVSLAGPDGRVIGGGVAGLLTAASPIQVVVGSFMPNSHKAHRRKQHLVPSMASAIPGAADTVTVARPISQATPDDDTCATPTSTLPEQNQGDAENSTSSNQNPNSTSFRNVGWHGLQSMSDQRPSPDINVCVPGE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01807 335 MobiDBLite consensus disorder prediction 40 100 - -
Eupl05g01807 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 240 - -
Eupl05g01807 335 MobiDBLite consensus disorder prediction 72 87 - -
Eupl05g01807 335 MobiDBLite consensus disorder prediction 1 24 - -
Eupl05g01807 335 FunFam AT-hook motif nuclear-localized protein 1-like 120 249 - -
Eupl05g01807 335 ProSiteProfiles PPC domain profile profile. 115 254 IPR005175 -
Eupl05g01807 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Eupl05g01807 335 PRINTS AT-hook-like domain signature 86 97 IPR017956 GO:0003677
Eupl05g01807 335 PRINTS AT-hook-like domain signature 55 65 IPR017956 GO:0003677
Eupl05g01807 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 302 IPR039605 GO:0003680
Eupl05g01807 335 CDD DUF296 119 233 IPR005175 -
Eupl05g01807 335 Gene3D - 120 249 - -
Eupl05g01807 335 MobiDBLite consensus disorder prediction 270 325 - -
Eupl05g01807 335 MobiDBLite consensus disorder prediction 1 28 - -
Eupl05g01807 335 MobiDBLite consensus disorder prediction 270 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01807 Eupl-Chr5 43069384 43076861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01807 48 292 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.481 2.26e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01807 - - nnu:104587535 468.774