Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01806 ATGGGGAACAAGGTCATAGATGAGCTGATAATGACGGTTCGATCGGTTATCGGTCGAGATTTCTCGGACATGGATATAATCCGGGCCCTTCATATGGCTAACAATGACGTAACTGCGGCACTCAACATTATCTTCGACACTCCCAATTTTGGCACCAGAGAAAGAGCAGAGGCTCGGAAAAATCCCGAATTTTCTTGCCAGAATTCAAATACTGAAAGTAGAACTGTCGTCCAGAATCCCGAGCAAAGCAGCAATGAGGATCAGGTTCGCTCGTCGGATTCTGATGCAAATGGGACTTCTAATTCGAACCCTCACACTGGTGGTGCCATTGAATCTCCGGAACCTGCAAACCAGTCCTCGGATTCAATTGGTAGCAAATGGTGGTTTGTCTGTAGTTCGGAACTTTCGGGACTTTCTACGTGTAAAGGAAGGAGGCTCAAGGCCGGTGATGAAGTAATCTTTTCATTCCCTTCCAAGAATTCTAATTCCCCTTTGACGACCAAATTTCCTGGCCGAGGCCGATCACCTGCTGCTTGTCCGGAGATTGTGAGGTTCTCCACAAAAGATTCAGGAGAGATTGGTCGCATTCCAAATGAGTGGGCCCGTTGCCTTTTGCCACTTGTGAAAGATAAGAAGGTTTGGATTGAGGGTCACTGTAAATTTGCTCCAGACATCCTTGGGATTATGGACACCATTCTTTTGTCTGTCAGCATATACATCAATAGTTCCATGTTCCGTAAGCGCCACCAGACTTCGCTCAAGGCACCCCGTAATTCTACTGAGGAATCAGTTGTTCATCCTCTCCCTACCTTGTTCAGGTTGCTTGGGTTGGTCCCTTTTAAGAAGGCAGAAATCACTCCAGAGGATCTTTACACAAGGAAGCGACATTTGGACTCAAAGGACACTTCTGGAGTTTATGCCTCGTTACGCACTGAGAAATCTAAAAAGCCACCTGTCCATGGAAGTGAAGTTGAAAATGAGCAGGAGCCCATTTCAGATCCCGACCTGGATATTATTGTTGGTATTGGAGACAGCTCTGAGCTAGAGGAAATGAATCCCCCAAGTACCCTGCATTGTGAACTACGACCTTACCAAAAGCAGGCTCTTCATTGGATGGTCCAGCTAGAGAAGGGGGGATGCCTGGAGGAGGCAGCAACAACCCTTCACCCATGCTGGGATGCATATCGTCTTGCAGACAAGAGGGAGCCTGTTGTCTATTTGAATGCATTTTCGGGGGACGCTACAACTGAATTTCCTAGCACTCTTCAAATGTCAAGAGGAGGTATTTTGGCAGATGCTATGGGGCTTGGGAAGACCATTATGACAATAGCTCTTCTACTTGCTCATTCTGAAAGAGGTGGATCATCAGGTAGTCACCTCATGAGTCAGGCCTCCAGTGAAACTAATGAAATCAGCAATATGCCGGACCAATCTCCAAATCCTCTAAAGAAAATAACAAAGTTTTCTGGTTTTGATAAGCTGATGAAACCTAGGACCTCGCTTATCGGCGGTGGCAATCTGATTGTTTGCCCTATGACTCTGCTAGGCCAGTGGAAGACAGAAATTGAAACTCATGGCCAACCTGGATCTTTGTCTCTATATGTTCATTATGGACAAAGCAGACCAAAAGATGCAAAGCTTCTAGCACAGAATGATGTTGTTCTCACTACGTACGGCGTATTAGCGTCAGAATATTCAGTCGAGAATGCTGAAGACAGTGGTGGACTTTATTCTGTACAGTGGTTTAGAGTTGTGCTCGATGAGGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTATGGCTGCAGTTGCTCTAACTGCTGATCATCGGTGGTGTCTTACCGGTACCCCTATTCAGAACAATCTGGAGGACGTTTACAGTCTTCTACGGTTTTTGAGGGTGGAACCTTGGGGCAACTGGGGCCTGTGGAATAAACTTATTCAAAAGCCTTTTGAGGAAGGTGATGAGCGGGGCTTGAAGTTGGTCCAATCCATCTTAAGGCCAATTATGTTAAGAAGGACCAAGCTCAGCATAGACAGAGAGGGCAGGCCAATTCTTGTTCTCCCACCAGCAGATGTTCAGGTGATCTACTGTGAGCTCACAGCAGCTGAGAAGGATTTCTATGAGGCTCTGTTTAAAAGATCCAAGGTCAAGTTTGATCAATTTGTTGAGCAAGGGCGGGTTCTTCATAATTATGCTTCCATTTTGGAGTTGCTTTTACGTCTTCGCCAGTGTTGTGATCATCCATTTCTTGTGATGAGTCGGGGCGATACAAAAGAATTCTCGGATCTGAATAAGCTCGCGAAACGTTTCCTTAAAGGCGGTCAGGATGCCATACAAGTGGAATCTAGTGACGTGCCTTCTAGGGCTTATGTTCAGGAGGTTGTGGAAGAGCTGCGTAAGGGAGAAATGGGAGAGTGTCCAATTTGCCTTGAAGCTTTTGAAGATGCAGTATTGACACCGTGTGCTCACCGTTTGTGCCGGGAATGTCTCCTGGCAAGTTGGCAAAACCATACTTCTGGTCTTTGTCCTGTTTGTAGGAAACTCATCAGCAGGCAAGATCTTATTACTGCTCCAACTGACAGTCGATTCCAGATTGATATTGAGAAGAATTGGGTGGAATCATCCAAAGTTGCGGTTCTTCTGCGTGAACTAGAAAATTTTCGAAAGTTGGGCTCCAAAAGCATTGTTTTTAGCCAGTGGACTGCATTTCTGGACCTTCTGCAGATTCCTCTTTCTCGGAGTAATTTTTCGTTTGTTCGGTTGGATGGGACTCTAAATCAGCAACAGCGGGAAAAAGTAATTAAGCAATTTTCAGAGGAAGACGACATCTTGGTATTGTTGATGTCATTGAAGGCTGGTGGAGTTGGAATAAACCTAACAGCAGCATCCAATGCCTTCCTTTTGGATCCGTGGTGGAATCCTGCTGTTGAGGAACAAGCAGTCATGCGAATTCATCGCATTGGTCAAACTAAAAGGGTAACAATCAAAAGGTTCATTGTGAAGGGAACGGTTGAGGAAAGAATGGAGGCAGTGCAGGCCCGTAAGCAGCGAATGATCTCTGGTGCTCTAACTGATCAAGAAGTCCGTACTGCACGTGTAGAGGAACTGAAAATGTTCTTCACTTAG 3132 0.4556 MGNKVIDELIMTVRSVIGRDFSDMDIIRALHMANNDVTAALNIIFDTPNFGTRERAEARKNPEFSCQNSNTESRTVVQNPEQSSNEDQVRSSDSDANGTSNSNPHTGGAIESPEPANQSSDSIGSKWWFVCSSELSGLSTCKGRRLKAGDEVIFSFPSKNSNSPLTTKFPGRGRSPAACPEIVRFSTKDSGEIGRIPNEWARCLLPLVKDKKVWIEGHCKFAPDILGIMDTILLSVSIYINSSMFRKRHQTSLKAPRNSTEESVVHPLPTLFRLLGLVPFKKAEITPEDLYTRKRHLDSKDTSGVYASLRTEKSKKPPVHGSEVENEQEPISDPDLDIIVGIGDSSELEEMNPPSTLHCELRPYQKQALHWMVQLEKGGCLEEAATTLHPCWDAYRLADKREPVVYLNAFSGDATTEFPSTLQMSRGGILADAMGLGKTIMTIALLLAHSERGGSSGSHLMSQASSETNEISNMPDQSPNPLKKITKFSGFDKLMKPRTSLIGGGNLIVCPMTLLGQWKTEIETHGQPGSLSLYVHYGQSRPKDAKLLAQNDVVLTTYGVLASEYSVENAEDSGGLYSVQWFRVVLDEAHTIKSSKSQISMAAVALTADHRWCLTGTPIQNNLEDVYSLLRFLRVEPWGNWGLWNKLIQKPFEEGDERGLKLVQSILRPIMLRRTKLSIDREGRPILVLPPADVQVIYCELTAAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTKEFSDLNKLAKRFLKGGQDAIQVESSDVPSRAYVQEVVEELRKGEMGECPICLEAFEDAVLTPCAHRLCRECLLASWQNHTSGLCPVCRKLISRQDLITAPTDSRFQIDIEKNWVESSKVAVLLRELENFRKLGSKSIVFSQWTAFLDLLQIPLSRSNFSFVRLDGTLNQQQREKVIKQFSEEDDILVLLMSLKAGGVGINLTAASNAFLLDPWWNPAVEEQAVMRIHRIGQTKRVTIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARVEELKMFFT* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01806 1043 Gene3D - 690 1043 IPR027417 -
Eupl05g01806 1043 SMART ultradead3 357 650 IPR014001 -
Eupl05g01806 1043 MobiDBLite consensus disorder prediction 62 120 - -
Eupl05g01806 1043 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 636 IPR014001 -
Eupl05g01806 1043 SMART helicmild6 907 990 IPR001650 -
Eupl05g01806 1043 SMART HIRAN_2 128 240 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl05g01806 1043 ProSitePatterns Zinc finger RING-type signature. 823 832 IPR017907 -
Eupl05g01806 1043 Pfam SNF2-related domain 364 752 IPR000330 GO:0005524|GO:0140658
Eupl05g01806 1043 MobiDBLite consensus disorder prediction 313 327 - -
Eupl05g01806 1043 SUPERFAMILY RING/U-box 807 854 - -
Eupl05g01806 1043 CDD SF2_C_SNF 874 1001 - -
Eupl05g01806 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1030 IPR027417 -
Eupl05g01806 1043 MobiDBLite consensus disorder prediction 55 120 - -
Eupl05g01806 1043 Pfam HIRAN domain 133 236 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl05g01806 1043 ProSiteProfiles Zinc finger RING-type profile. 808 848 IPR001841 -
Eupl05g01806 1043 Pfam Zinc finger, C3HC4 type (RING finger) 808 847 IPR018957 GO:0046872
Eupl05g01806 1043 MobiDBLite consensus disorder prediction 306 329 - -
Eupl05g01806 1043 CDD DEXDc_SHPRH-like 361 674 - -
Eupl05g01806 1043 SMART ring_2 808 847 IPR001841 -
Eupl05g01806 1043 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 881 1038 IPR001650 -
Eupl05g01806 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 674 IPR027417 -
Eupl05g01806 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 768 870 IPR013083 -
Eupl05g01806 1043 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 121 1042 - -
Eupl05g01806 1043 Pfam Helicase conserved C-terminal domain 878 990 IPR001650 -
Eupl05g01806 1043 Gene3D - 419 685 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01806 Eupl-Chr5 43037625 43057004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01806 1 1043 RAD5 or RAD16-like Gene Family AT5G22750 70.455 0.0 1493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl05g01806 SNF2_N 4.9e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01806 K15505 - nnu:104587509 1706.03