Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01802 ATGGGGTCTGAGGAAATTAGATCGGAGGATCATGCGAAGAAGAGGAGAAAGAGGGAAGTTGATGGAGAGAGTGTTGATCGATTGGAGGAGGGTTTGAAGAGTTGTGCGAGGGTTGTTGAGACGAGGTCGAAGGCTCTGGTGGGAAGATATGTGCGGAAGGAGTTTGAAGGGCACGGGATTTTCCTGGGGAAGGTTGTTTCTTACACCGATGGATTATATAGAGTTGATTATGAGGATGGGGATTGTGAGGATCTCGAGTGCGGTGAAATCAGTGAGATTCTCATGGGGGAGGGTGATTTTGATGCGGAGCTTAATATCAGGAAGAAGAAATTAGATGAGTTGATTTTTATGGATGATTCAAAGACACCAAGTAGAAGATCAGGGAAAAAGGATGTGGCCTTCGCCAATGGCCTTGACACAATCAAAGCGTCTTCTGTCAGTAAGATGAGTTCTGATTTTGAATGTGATTCCGGTAACGCTTTTGATCCAGATGGGGTTCAGAAACCTTTTATTGACAGAGATGCCGACACTTCCAGTGATTCTAGTGAGTTTGTTCGAGTTCGGGATTCCTGCTCAGAGACTGAAGCCCCCCTTATTCCACAACTGTCATTGCCTCCATCCTCAGGCAATATAGGCGTACCAGAGGAATCTGTTTCTCAGCTCTTCTCAGTTTACAATTTCTTGCGATCGTTTAGTATTCAGCTTTTCTTAAGCCCCTTCCGACTGGACGATTTTGTGGGATCACTTAACTGTGTTACCCCCAATACTTTGTTGGACGCCGTTCATTTTGCCCTCATGCGTGCATTAAGACGTCATCTTGAGATGCTTTCTTCTGATGGAGCGGAGCTTGCATCAAGATGCCTGAGGCGCCTTGACTGGAGCTTACTTGACACATTGACTTGGCCAGTTTACTTAGTCGAATATCTTCTGGTAATGGGGTACACAAAGGGGCCAGACTGGAAAGGATTTTATTCCGATGCTTTAGACAGGGAATATTACAGCTTATCTGCAACCAGGAAGCTGATGATCTTGCAAATATTGTGTGATGATGTCATAGAATCTGCAGAACTAAGAGCAGAAATCGATATGCGGGAAAATTTGGAAGCGGGAATAGATCCTGATGGTATTGCAGGCCTTCCTCCAGAAAATGGTCCGAGAAGAGTACATCCCAGATATTCCAAAACCTCAGCTTGCAAGGACCCAGAAGCTATGGAGATCATCGCTGAACCTCACGAGTTCAAATCAAGTCATTGCACAAGTTCTTTGGATTCTAAAATTGCTGAACTGGATACAGATGCTGCTGATGTTGATCAGGATGGGAATAGTGATGAATGCCGGCTTTGCGGCATGGATGGGACCTTACTTTGCTGTGATGGGTGCCCTTCAGCTTATCATTCGAGATGTATTGGTCTAAGCAAATTAATTATACCAGAAGGTTCATGGTTTTGTCCTGAGTGTGCAGTTGATAAGATGGAGCCAACTCTCAGACTTGGAACAGGACTAAGAGGAGCAGTGATCTTTGGCATCGATCCATATGAGCAGGTTTTTTTGGGTACTTGCAATCACTTACTTGTGCTCAAGGCCTCGATCAATGAAGGACCATCTTCGAGATACTACAATCAGAATGACATTCCAAAATTCCTGCGAGTACTTTGTTCATCTGTACAACATACAACCTTGTACTCAGGGATATGCAAGGGCATTTTACAGTACTGGGAAATACCAGAAGATGCAAATTTCTCTCTTCTTCAAGGAACTGAAGCTGGTACTAATCCAGTAGATGAAAAGGAAGATGCAATGGTTTCTATCCCATTGTACACCCTTTCTGGTAAGGAGACCGAGAAACTCCTAGATTCAGTTGAGGCAGAGAATTATGCAAGCAGTGTAACTGAAAGTAATGTAAACAATGGAGCACTGTCTTGTTGGGAGAATGATTTCCAAGAAGCTGGGTTGATTGGAACCTCCTTGGATACAGTGAACCAAGCCTGCCTTCCAGGTGTTGCGAGAGATGATGATGTTACTGCCCAGCAGGTTTGTCTACTCACAAATAACAAGTCTCATGAGCACTTTGGAACAGAATCTGTGATGTCTGCTGGGTCAATCAGCCTCCATGCTGAACCTTCTGACTTAAACCACCAAAGCTTGGGTAAAAGATTGATGGAATTTGTTACCTGTGCCACGGTAAAGAGATGTGATGCTAACAGGAAAGATGCAGATGATTTGTTTTTGCAAACGAATAATGGTGCTTTGAGCATGCCTTGTGAAAGCAGAGAAGGTAAACATAGCGGTAGTGAGACAAGTAAAGGAGATGCTGTTGATGATTGCTCATACATGGGGACTTTTTTCAAGCCTCAGGCTTACTTAAATCAGTATACTCATGGTGATGTTGCTGCATCTGCAGCTGCTAATCTAGCTGTTCTTGCATCAGAAGAAGATCGAGTTTCTCAGACTCACACTTCATTCAACCACAGGAAAATTGTTTCCGCTAACATCTCACTGCAAGTAAAAGCATTCTCATCAGCTTCCATTCGTTTTTTCTGGCCAAATTCTGAAAAGAAGCTAATGGAGGTTCCAAGGGAAAGATGTGGTTGGTGCCTTTCATGCAAGGCTCCCGCTACAAGCAAGAAAGGATGTTTGTTAAACTCAGCTGCCTCGAATGCCATTAAGGGATCTGCGAGGATCCTTGGCGACCTTCGTCCCATAAAGAATGGGGACGGAAATCTTCCTGGTATTGCCACATATATTTTATGCATGGAGAAGAGTTTACGTGGTCTAGTAGTTGGGCCCTTCCTGAGTGCAAGTTATAGAAAACAATGGTGTAAACAAGTTGAACAAGCTTCAACCTGCATAGCAATAAAGTCCCTCTTGCTTGAATTTGAGGAGAACATTCGCTTGGTTGTTTTCTCTGGGGGCTGGATTAAGCTGGTAGATGATTGGAAAGTTGAGTCTTCTGGGGCCCATGGTGGTACATGCTCTGTTGGACCAAATCCAAAGCGAACAAGTGGGAGGCGGAATAGGAAACTATATGCAACATCTGAAATTACAGCAGACCCTTGCAATGAAGATTTGAGGAATGTTAGCTGGTGGCGCGGAGGAAAACTTTCGAAGCTTGTATTTCAGAAAGGGATTTTGCCACACTCAATAGTTAAAAAAGCAGCTCGTCAAGGTGGTTCTAGAAAGATTTTTGGTATTTATTATGCTGAAGGTTCTGATATTCCCAAAAGAAGAAGACGGTTTGCTTGGAGAGCTGCAGTAGAAATGAGTAAGAACGCACCACAGCTTGCACTTCAGGTCAGATACCTTGACTTTCATGTAAGATGGAATGATCTTCGTCCAGAGAAGAACCTTCAGGATGGCAAAGGACCAGAGACTGAAACTTCTGCTTTCAGAAATGCGCTCATTTGTGATAAGAAGATTCAGGAAGACAAGATTTTATATAGATTGGCTTTTGGCAATCAGAAACATCTACCTTCTCGAGTCAAGAAGACTATTATTGAAGAGGAGGAGCAGAACCAAGAAGAGAACAAGTTTTGGTTTTCCGAAAGTCACGTCCCTCTGTACCTGATAAAAGAATACGAAGAAAAGGCAGAGGAGGTCCCTTTGCTGTCAGTTAAGAAGGCCTCGCATATTTTGTCCAACTTTCAAAGAAGACAGCTAAAAGCTTCCCGGAGGGATATATTCTCGTATCTTATGCGTAAGCGGGAGAAACTAGACAAGTGCTCTTGTGCCTCATGTCAAGAGGATGTTCTACTGAGGGATGCAGTCAAGTGCAATATATGTCAAGGTTATTGTCACAAGGATTGTACCATACCTCCAACAGTTGGCACGAAAGGTGGGGTAGAATTTGTGATCACATGCAACCAGTGTTACTGTGCCAAAGCTCTAGATGAGAACATTAAGAAGCCCCCAATCAGTCTATTGTCCTTGCCAGGCCAAGAATGTCAGATGGCAGTGACGGTTACTAAAGGCGCATGGCAAAATGGTTATCATCAACCATTAGTATCCATTGGGAATATCGAAACCCATTCAGTGATGAAACCAACCACCCCCAGTCCCAATTTGGCAACCAAAGGTAAACGAGGGACAGTTGCTTCTTATGGTCTTATATGGAAGAAGAAAGGTGGGGAGAGCGGAGCTGATTTTCGGCTGAACAACATTCTTCTCAGAGGCAATGTAGATATTGACCCATCGAGGAGACCCAAATGCAACCTCTGCTCTAAACCATACAATTCAGATCTGATGTATATCTGCTGTGAAAATTGCAAAAATTGGTTCCATGCCGATGCCATCCAACTCAAGGAATCCCAAATTTTTGATGTGTTTGGGTTCAGGTGCTGCAAGTGCCGTAGGAAAACCTCTCCTGTATGCCCCTATAGGGATCCGGAGTGCAGGAGGACACGCATGAGGGCTTCGAAGCAAGGTAGCATGGGAATTGACCCTGTATATGAAACCATCTGCAAACAACCTGAAGGATATGAAACTACTCCTACAGTATTACACACAAAGATGGAGGAGATCATGGAAGAGGATGATCCCCTTCTTTTCTCCCTGGAAAGAGTTGAGCCAATCACAGAGCCCACATCTGACGTCGGACCTGAATGGAATACTGCTGGAGCATTATACCAGGGCCCACAGAAACTACCAGTCAGAAGACAAGTGAAGCACGAAAGGGGTGCAGACGGTTCTATGAATTCATATAATGCAGAATTTATACCCCTTGAAACAAACACCCTTTTGAGCTCTGAGAAATCATCACCCCCTCAAGTAGAATGGGAGTTGCCTATTGATGGTCTTAAAGAAGAGATGTTTGACTATGAAGATGTGCACTATGAGGACATGGAATATGAACCTCAGACCTACTTCTCTTTTTCTGAATTGCTGGCAACTGATGATGACCAGTTGGACCTACTTGATGCATCGTTGGACACATATGGTAATGGGGGCAATTTGTCTGGTTGTGGTACAATCCCGCCCTGCAACTTACCTGAACAATACGAAATGGATTCCACGAAAGATTATCAAGAACTCGCCATTGTAGAACATGCGGTCGACACAGTACGTTGTCAGATGTGTTCACACACGGAACCAGCCCCAGATCTTTCTTGTGAGATCTGCGGAATGTGGATACACAACCATTGTTCACCATGGGTAGAGTCAAGTTCAGAGTACAGGTGGAGGTGGAGATGTGGTCGCTGCAGGGATTGGCGGTAG 5211 0.4421 MGSEEIRSEDHAKKRRKREVDGESVDRLEEGLKSCARVVETRSKALVGRYVRKEFEGHGIFLGKVVSYTDGLYRVDYEDGDCEDLECGEISEILMGEGDFDAELNIRKKKLDELIFMDDSKTPSRRSGKKDVAFANGLDTIKASSVSKMSSDFECDSGNAFDPDGVQKPFIDRDADTSSDSSEFVRVRDSCSETEAPLIPQLSLPPSSGNIGVPEESVSQLFSVYNFLRSFSIQLFLSPFRLDDFVGSLNCVTPNTLLDAVHFALMRALRRHLEMLSSDGAELASRCLRRLDWSLLDTLTWPVYLVEYLLVMGYTKGPDWKGFYSDALDREYYSLSATRKLMILQILCDDVIESAELRAEIDMRENLEAGIDPDGIAGLPPENGPRRVHPRYSKTSACKDPEAMEIIAEPHEFKSSHCTSSLDSKIAELDTDAADVDQDGNSDECRLCGMDGTLLCCDGCPSAYHSRCIGLSKLIIPEGSWFCPECAVDKMEPTLRLGTGLRGAVIFGIDPYEQVFLGTCNHLLVLKASINEGPSSRYYNQNDIPKFLRVLCSSVQHTTLYSGICKGILQYWEIPEDANFSLLQGTEAGTNPVDEKEDAMVSIPLYTLSGKETEKLLDSVEAENYASSVTESNVNNGALSCWENDFQEAGLIGTSLDTVNQACLPGVARDDDVTAQQVCLLTNNKSHEHFGTESVMSAGSISLHAEPSDLNHQSLGKRLMEFVTCATVKRCDANRKDADDLFLQTNNGALSMPCESREGKHSGSETSKGDAVDDCSYMGTFFKPQAYLNQYTHGDVAASAAANLAVLASEEDRVSQTHTSFNHRKIVSANISLQVKAFSSASIRFFWPNSEKKLMEVPRERCGWCLSCKAPATSKKGCLLNSAASNAIKGSARILGDLRPIKNGDGNLPGIATYILCMEKSLRGLVVGPFLSASYRKQWCKQVEQASTCIAIKSLLLEFEENIRLVVFSGGWIKLVDDWKVESSGAHGGTCSVGPNPKRTSGRRNRKLYATSEITADPCNEDLRNVSWWRGGKLSKLVFQKGILPHSIVKKAARQGGSRKIFGIYYAEGSDIPKRRRRFAWRAAVEMSKNAPQLALQVRYLDFHVRWNDLRPEKNLQDGKGPETETSAFRNALICDKKIQEDKILYRLAFGNQKHLPSRVKKTIIEEEEQNQEENKFWFSESHVPLYLIKEYEEKAEEVPLLSVKKASHILSNFQRRQLKASRRDIFSYLMRKREKLDKCSCASCQEDVLLRDAVKCNICQGYCHKDCTIPPTVGTKGGVEFVITCNQCYCAKALDENIKKPPISLLSLPGQECQMAVTVTKGAWQNGYHQPLVSIGNIETHSVMKPTTPSPNLATKGKRGTVASYGLIWKKKGGESGADFRLNNILLRGNVDIDPSRRPKCNLCSKPYNSDLMYICCENCKNWFHADAIQLKESQIFDVFGFRCCKCRRKTSPVCPYRDPECRRTRMRASKQGSMGIDPVYETICKQPEGYETTPTVLHTKMEEIMEEDDPLLFSLERVEPITEPTSDVGPEWNTAGALYQGPQKLPVRRQVKHERGADGSMNSYNAEFIPLETNTLLSSEKSSPPQVEWELPIDGLKEEMFDYEDVHYEDMEYEPQTYFSFSELLATDDDQLDLLDASLDTYGNGGNLSGCGTIPPCNLPEQYEMDSTKDYQELAIVEHAVDTVRCQMCSHTEPAPDLSCEICGMWIHNHCSPWVESSSEYRWRWRCGRCRDWR* 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01802 1736 Pfam PHD-finger 445 487 IPR019787 -
Eupl05g01802 1736 MobiDBLite consensus disorder prediction 1 20 - -
Eupl05g01802 1736 Pfam DDT domain 216 272 IPR018501 -
Eupl05g01802 1736 SMART PHD_3 1241 1290 IPR001965 -
Eupl05g01802 1736 SMART PHD_3 1687 1733 IPR001965 -
Eupl05g01802 1736 SMART PHD_3 444 487 IPR001965 -
Eupl05g01802 1736 SMART PHD_3 1401 1449 IPR001965 -
Eupl05g01802 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1396 1456 IPR013083 -
Eupl05g01802 1736 CDD Tudor_AtPTM-like 47 95 IPR047365 -
Eupl05g01802 1736 ProSiteProfiles Zinc finger PHD-type profile. 442 489 IPR019787 -
Eupl05g01802 1736 SMART testlast3 215 275 IPR018501 -
Eupl05g01802 1736 ProSiteProfiles DDT domain profile. 215 275 IPR018501 -
Eupl05g01802 1736 SUPERFAMILY FYVE/PHD zinc finger 438 493 IPR011011 -
Eupl05g01802 1736 CDD PHD2_CHD_II 445 486 - -
Eupl05g01802 1736 MobiDBLite consensus disorder prediction 372 392 - -
Eupl05g01802 1736 SUPERFAMILY FYVE/PHD zinc finger 1394 1455 IPR011011 -
Eupl05g01802 1736 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 319 362 IPR028942 -
Eupl05g01802 1736 ProSitePatterns Zinc finger PHD-type signature. 445 486 IPR019786 -
Eupl05g01802 1736 PANTHER PHD FINGER FAMILY PROTEIN 40 1699 - -
Eupl05g01802 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 492 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01802 Eupl-Chr5 42986035 42998267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01802 305 575 EF-hand Containing Proteins AT5G22760 52.768 4.50e-85 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Eupl05g01802 DDT 7.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01802 - - ming:122088786 2033.45