Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01789 ATGTTCTTGGTTGGCCATGATAATGAAACAAAATACCCAGAAGGAATGTTGCAAGAGAACCAAGGAATCCAGGTATTAGAGATCCAGGATTTTGGATGCAGAGGATCTGCACAACAGGATCAGGAAGAGGTTCGTGGAAGGAGAAAGTTGAGCCTAAAGAAGAGCGCAATAGTGGCGAAGAAGAACAGCGACAGCGACGAAGACGAGACTCTCTACTACCGCTACTCCTCTGCCCCTCCATCATCCTCGTCAGCCCAAGATTCATCCAAAACCTCAAAGAGATCAAGCGGCAGCGGAGGCCTCGCCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACAACCTCACAAACTCCGACCTCTTCACCATATTCTGCACTTTCGGCAAGGTCGCCAAGGTCACCGTCCTTAAAGATCGCCAATCCCGCCGCAGCCGCGGCGTCGCCTTCGTTCTCTTCGTTTCTCAAGATGATGCCCGCAAAGCAGTACGAGAGATACGGGCAAGGTTTTGA 516 0.5078 MFLVGHDNETKYPEGMLQENQGIQVLEIQDFGCRGSAQQDQEEVRGRRKLSLKKSAIVAKKNSDSDEDETLYYRYSSAPPSSSSAQDSSKTSKRSSGSGGLAPSKSTVYVGNLDYNLTNSDLFTIFCTFGKVAKVTVLKDRQSRRSRGVAFVLFVSQDDARKAVREIRARF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01789 171 MobiDBLite consensus disorder prediction 55 102 - -
Eupl05g01789 171 SMART rrm1_1 107 170 IPR000504 GO:0003723
Eupl05g01789 171 SUPERFAMILY RNA-binding domain, RBD 78 166 IPR035979 GO:0003676
Eupl05g01789 171 Gene3D - 30 170 IPR012677 -
Eupl05g01789 171 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 61 168 IPR044598 GO:0000398|GO:0005689
Eupl05g01789 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 171 IPR000504 GO:0003723
Eupl05g01789 171 MobiDBLite consensus disorder prediction 75 102 - -
Eupl05g01789 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01789 Eupl-Chr5 42814381 42817952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01789 106 170 Eukaryotic Initiation Factors Gene Family AT4G34110 36.923 9.96e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01789 K13154 - nnu:104587370 154.451