Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01786 ATGGTGGTGAAGAAGAACAGCGACAGCGACGAAGACGAGACTCTCTACTACCGCTACTCCTCTGCCCGTCCATCATCCTCGTCAGCCCAAGATTCATCCAAAACCTCAAAGAGATCAAGCGGCAGCAGAGGCCTCACCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACAACCTCACAAACTCCGACCTCTTCACCATATTCTCCACTTTCGGCAAGGTCGCCAAGGTCACCGTCCTTAAAGATCGCCAATCCCGCCGCAGCCGCGGCGTCGCCTTCGTTCTCTTCGTCTCTCAAGATGATGGCCGCAAAGCAGTACGAGAGATACAGGGCAAGGTTTTGAACAAACGGACTCTAACGATATCGATCGCTGCCGATAATGGCTGA 393 0.5293 MVVKKNSDSDEDETLYYRYSSARPSSSSAQDSSKTSKRSSGSRGLTPSKSTVYVGNLDYNLTNSDLFTIFSTFGKVAKVTVLKDRQSRRSRGVAFVLFVSQDDGRKAVREIQGKVLNKRTLTISIAADNG* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01786 130 MobiDBLite consensus disorder prediction 19 49 - -
Eupl05g01786 130 MobiDBLite consensus disorder prediction 1 49 - -
Eupl05g01786 130 MobiDBLite consensus disorder prediction 1 17 - -
Eupl05g01786 130 Gene3D - 3 130 IPR012677 -
Eupl05g01786 130 SMART rrm1_1 51 124 IPR000504 GO:0003723
Eupl05g01786 130 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 130 IPR044598 GO:0000398|GO:0005689
Eupl05g01786 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Eupl05g01786 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Eupl05g01786 130 SUPERFAMILY RNA-binding domain, RBD 46 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01786 Eupl-Chr5 42702185 42702577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01786 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 33.766 1.94e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01786 K13154 - nnu:104587370 184.882