Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01785 ATGGTGGTGAAGAAGAACAGCGACAGCGACGAAGACGAGACTCTCTACTCCTCTGCCCCTCCATCATCCTCGTCAGCCCAAGATTCATCCAAAACCTCAAAGAGATCAAGCGGCAGCGGAGGCCTCGCCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACAACCTCACAAACTCCGACCTCTTCACCATATTCTCCACCTTTGGCAAGGTCACCGAGGTCACCGTCCTTAAAGATCGCCAATCCCGCCGCAGCCGCGGCGTTGCCTTCGTTCTCTTCGTCTCTCAAGATGATGGCCGCAAAGCAGTACGAGAGATGCAGGTCAAGGTTTTGAACAAACGGACTCTAACGATATCGATCGCTGCCGATAACGGCTGA 384 0.5339 MVVKKNSDSDEDETLYSSAPPSSSSAQDSSKTSKRSSGSGGLAPSKSTVYVGNLDYNLTNSDLFTIFSTFGKVTEVTVLKDRQSRRSRGVAFVLFVSQDDGRKAVREMQVKVLNKRTLTISIAADNG* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01785 127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Eupl05g01785 127 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 127 IPR044598 GO:0000398|GO:0005689
Eupl05g01785 127 MobiDBLite consensus disorder prediction 13 48 - -
Eupl05g01785 127 MobiDBLite consensus disorder prediction 1 48 - -
Eupl05g01785 127 Gene3D - 2 127 IPR012677 -
Eupl05g01785 127 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Eupl05g01785 127 SUPERFAMILY RNA-binding domain, RBD 44 125 IPR035979 GO:0003676
Eupl05g01785 127 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01785 Eupl-Chr5 42701702 42702085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01785 47 123 Eukaryotic Initiation Factors Gene Family AT1G49760 35.065 5.38e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01785 K13154 - nnu:104587370 175.637