Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01758 ATGGCGGTTCCTTCGAGCGTGCCAGCGCCTGCTTCGCTATACGTTGGGGACCTTCACCCGGACTTGTCGGATGGGAAACTCTTTGAGGCCTTCGCTGACATTGGAAGCCTTGCGTCGGTACGGGTTTGCAGGGATTCGTTATCGGGGCGATCGCTTGGTTACGGATACGTCAACTTTATTGCTACCGAAGATGCAACTCGAGCTATTGAGAAACTGAATCACACTCCATTGAATGGGAAAAATATAAGAATTATGTGGTCTCATCGTGATTCGGAAGCAAGAAAGAGTGGGATCGGGAATCTGTTTGTGAAGAACCTGAACAATTCGATTGATAATGTGAGGCTCCACGAGATGTTTTCAAAGTTTGGGCACATCTCGTCATGCAAAGTAGTGATGTCCCAGGATGGGAAGAGCAATGGCTATGGCTTTGTCCAGTTTGAGTCTGAGGAATCTGCAAATGCTGCCATGAAGAATCTTAATGGCTCCACAATTGAAGGAAAGCAAATATATGTTGGTAATTTCGTGAAAAAGAGTGATCGGGTTTTAGCCAGCCCCAATGCTAAATATACCAATTTGTACTTGAAGAATCTGGACCAGGACGTGACAGAAGAACTTCTACAGGAAAAATTTTCTAAGTTTGGCAGAATTACTAACTTGGTTATCTCAAAGGACAACAATGGGAACTCGAGGGGTTTTGGATTTGTTAACTTTGATAGTCCAGACGATGCCAAAAGGGCAATGGAGGCAATGAATGGAACACAACTTGGCTCCAAGGTTATATATGTAGCGAGGGCACAGAAGAAAGCAGAGCGCGAGCAAATCTTGCGTCATCAGTTTGAGGAAAGGCGCAAGGAGCAAATCCAGAAATATAAGGGTTCAAATGTATATGTTAAGAACATCGACGATAATGTGGATGATGATGAACTACGAGAACACTTCAGTCAGTGCGGCACAATCACTTCTGCAAAGCTAATGCGCGATGATAAAGGAAATAGTAAGGGATTTGGGTTTGTGTGCTTCTCTGCTGCTGAGGAAGCCAACAAAGCTGTGAACACTCTACATGGATACATGTTTCATCGAAAGCCTTTATATGTGGCTATCGCCCAAACGAAAGAGGATAGGAAAGCACTGTTGCAGCTTCAGTATTCACAGCATGTGGCAGGATTAGTGGGACCCTCAACTGCTGTTATCCCTGCAGGGTATCCTCCTCTTTACTATGCACCTCCTGGTGTGGCTTCACAAATTCCTCCACGGCAGGGGCATATGTATCAACCTTTGGGTCTAAGACCCGGATGGAGGACCAATGGATTTGCACCTCCGACTAGACCGGCTTTCCAACCTGGTCCACTTCCCATGATCCCCAGTACTACTAGACAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATATGCTTCATCAGGTGCCATTTATGCCACATTTGCAACAACCCTCTCAATCAGTGAATTCATTAAAAGATTCAAGCAATCAACGGCGGGCTGGACAGGCGAAGTATGTGCCAAATGGGCAGCCACGCGAGATGAACAATGGATCTGCAATCCCATCTGCTGCTAAAAACTCTGCGTCCCAAGGATTGGAGATGTTGAGTAGCATGCTGGCTGCTGCTTCCCCTCAGCATCAGAAGCAGATGCTTGGCGAGCGTCTCTTCCCCCTCGTCAAGAAGCTACAGTATGACCTTGCTGCAAAGATAACTGGAATGCTTTTGGAGATGGACAACTCGGAACTACTTCTGTTATTGGAGTCGCCAGATTCACTGGCCACTAAAGTGGACGAAGCAGTGCAGGTGCTCAAGCTCACCAAGACCAAAGTAGCTGGCCAAGAGTCCCTCCATTCCAATTATTTGTCGGCCGAGGTTGCAGTCAACTGA 1887 0.4674 MAVPSSVPAPASLYVGDLHPDLSDGKLFEAFADIGSLASVRVCRDSLSGRSLGYGYVNFIATEDATRAIEKLNHTPLNGKNIRIMWSHRDSEARKSGIGNLFVKNLNNSIDNVRLHEMFSKFGHISSCKVVMSQDGKSNGYGFVQFESEESANAAMKNLNGSTIEGKQIYVGNFVKKSDRVLASPNAKYTNLYLKNLDQDVTEELLQEKFSKFGRITNLVISKDNNGNSRGFGFVNFDSPDDAKRAMEAMNGTQLGSKVIYVARAQKKAEREQILRHQFEERRKEQIQKYKGSNVYVKNIDDNVDDDELREHFSQCGTITSAKLMRDDKGNSKGFGFVCFSAAEEANKAVNTLHGYMFHRKPLYVAIAQTKEDRKALLQLQYSQHVAGLVGPSTAVIPAGYPPLYYAPPGVASQIPPRQGHMYQPLGLRPGWRTNGFAPPTRPAFQPGPLPMIPSTTRQHRQNRGRMNGHMLHQVPFMPHLQQPSQSVNSLKDSSNQRRAGQAKYVPNGQPREMNNGSAIPSAAKNSASQGLEMLSSMLAAASPQHQKQMLGERLFPLVKKLQYDLAAKITGMLLEMDNSELLLLLESPDSLATKVDEAVQVLKLTKTKVAGQESLHSNYLSAEVAVN* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01758 628 FunFam Polyadenylate-binding protein 276 384 - -
Eupl05g01758 628 SMART rrm2_1 100 172 IPR003954 GO:0003676
Eupl05g01758 628 SMART rrm2_1 294 366 IPR003954 GO:0003676
Eupl05g01758 628 SMART rrm2_1 12 85 IPR003954 GO:0003676
Eupl05g01758 628 SMART rrm2_1 191 263 IPR003954 GO:0003676
Eupl05g01758 628 Gene3D - 101 172 IPR012677 -
Eupl05g01758 628 Gene3D - 274 377 IPR012677 -
Eupl05g01758 628 Gene3D - 175 273 IPR012677 -
Eupl05g01758 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 531 608 IPR002004 GO:0003723
Eupl05g01758 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 171 IPR000504 GO:0003723
Eupl05g01758 628 Gene3D - 4 100 IPR012677 -
Eupl05g01758 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Eupl05g01758 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Eupl05g01758 628 Gene3D - 528 608 - -
Eupl05g01758 628 FunFam Polyadenylate-binding protein 181 275 - -
Eupl05g01758 628 FunFam Polyadenylate-binding protein 93 180 - -
Eupl05g01758 628 Coils Coil 262 282 - -
Eupl05g01758 628 PANTHER RNA BINDING PROTEIN 12 74 - -
Eupl05g01758 628 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 11 604 IPR006515 GO:0003723
Eupl05g01758 628 Pfam Poly-adenylate binding protein, unique domain 538 603 IPR002004 GO:0003723
Eupl05g01758 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Eupl05g01758 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Eupl05g01758 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Eupl05g01758 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Eupl05g01758 628 SUPERFAMILY RNA-binding domain, RBD 94 180 IPR035979 GO:0003676
Eupl05g01758 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Eupl05g01758 628 SMART poly_2 543 606 IPR002004 GO:0003723
Eupl05g01758 628 SUPERFAMILY PABC (PABP) domain 473 613 IPR036053 GO:0003723
Eupl05g01758 628 CDD RRM4_I_PABPs 292 369 - -
Eupl05g01758 628 SUPERFAMILY RNA-binding domain, RBD 5 96 IPR035979 GO:0003676
Eupl05g01758 628 FunFam Polyadenylate-binding protein 529 615 - -
Eupl05g01758 628 SUPERFAMILY RNA-binding domain, RBD 189 372 IPR035979 GO:0003676
Eupl05g01758 628 CDD RRM3_I_PABPs 189 268 - -
Eupl05g01758 628 SMART rrm1_1 294 366 IPR000504 GO:0003723
Eupl05g01758 628 SMART rrm1_1 191 263 IPR000504 GO:0003723
Eupl05g01758 628 SMART rrm1_1 100 172 IPR000504 GO:0003723
Eupl05g01758 628 SMART rrm1_1 12 85 IPR000504 GO:0003723
Eupl05g01758 628 MobiDBLite consensus disorder prediction 483 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01758 Eupl-Chr5 42306952 42312737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01758 8 626 Eukaryotic Initiation Factors Gene Family AT2G36660 50.643 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01758 K13126 - nnu:104587229 992.26