Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01745 ATGGTTGGAATGTCGTCGTCAGCGGCCTCAGCGTCTCGGCGTCTCCGAGAGCTTCAATCCCTCCCTGCGAACCGAACCTGTGTAGATTGCTGTCAAAAGAACCCACAATGGGCCTCTGTGTCCTACGGAGTGTTCATGTGCCTCGACTGCTCTGGAAAACACCGGGGCCTAGGGGTGCACCTCAGCTTCGTCCGCTCCGTCACCATGGACTCATGGCCCGAACCCTACCTGAAGAAAATGGAAGCCAACCCCGGCGGCAACCAAGCCCTCAACGCCTTCCTCTCCGCCCGCGCCATTGCCAAAGAAACCGACATCTCATTGAAATACAACACCAATGCCGCCACTAGCTTCCGCCACAAAATTCAGTCCCTCTCCGATAATCTCCCCTACCACGACCCCCCAATTATCCGAGAATCCGTCGATTCCAAACCCCCTAAGCATACATCCAACAATTCTGATTGGCAATGGGATGGATGGGACGATAATGGCGGTGGCCGTCATAATAGTAATATTCAGAGGAATCAATCAGTTGGGAATTTTCGGGCGAATGGGAGGATGAATGGGCCGAACCGGTCTTTGTCTTCGGCGGATATTTCTGGGACATTTCAGGCTTCGGCCGCGAATAAGGACAGTTTTTTTGCTAGAAAGGTTGCGGAGAATGAAGTGAGATCAGAGGGGATTCCGCCTTCTCAAGGGGGAAAGTACGTTGGGTTTGGGTCGACGGATACTAGACCAATTGCGAGGACTAGTTCTCAGGGAGATGTTATAATGGGGACTGTTTCAGCAGTTTCCCAGGGCTTTGGTCAATTATCTCTGGTTGCGTCATCTGCTGTACAGTCTGCGGCAAATGCAGTCCAAGCAGGCACATTGGAGCTGACTTCCAAGGTGAGAGAAGGTGTGTACGATGAGAAGATGAATGAGACTGTTAACACAGTAGCTTTAAAGACCACAGAACTTGGACAGAGGACCTGGGGAATCATGAAGGATGTAATGGCAATTGCATCTCAGAAAGTAGAGGAATACACAAGAGATGGAGTTGAATGGAAGGCGGAGTGGCATGATGATCAAGGAGTGCATGGGGCCAGCAATGGTCATGAGGATAAAGGCAATGACTCATCTTTTAGAGGATGGGATGATTGGGGAGCAGATAGTCCCATTTCTACTTCTGTTGTGGGGAAAAGTGGAGGGGAGGTAACTAAGAAAGGCCAAGGTGATGGAATTTGGGTTGGATGGGATTGA 1239 0.5069 MVGMSSSAASASRRLRELQSLPANRTCVDCCQKNPQWASVSYGVFMCLDCSGKHRGLGVHLSFVRSVTMDSWPEPYLKKMEANPGGNQALNAFLSARAIAKETDISLKYNTNAATSFRHKIQSLSDNLPYHDPPIIRESVDSKPPKHTSNNSDWQWDGWDDNGGGRHNSNIQRNQSVGNFRANGRMNGPNRSLSSADISGTFQASAANKDSFFARKVAENEVRSEGIPPSQGGKYVGFGSTDTRPIARTSSQGDVIMGTVSAVSQGFGQLSLVASSAVQSAANAVQAGTLELTSKVREGVYDEKMNETVNTVALKTTELGQRTWGIMKDVMAIASQKVEEYTRDGVEWKAEWHDDQGVHGASNGHEDKGNDSSFRGWDDWGADSPISTSVVGKSGGEVTKKGQGDGIWVGWD* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01745 412 Gene3D Arf GTPase activating protein 3 134 IPR038508 -
Eupl05g01745 412 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 97 IPR001164 GO:0005096
Eupl05g01745 412 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Eupl05g01745 412 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Eupl05g01745 412 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
Eupl05g01745 412 MobiDBLite consensus disorder prediction 356 412 - -
Eupl05g01745 412 MobiDBLite consensus disorder prediction 356 374 - -
Eupl05g01745 412 CDD ArfGap_ArfGap1 13 127 - -
Eupl05g01745 412 Pfam Putative GTPase activating protein for Arf 13 104 IPR001164 GO:0005096
Eupl05g01745 412 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 8 412 IPR044519 GO:0005096|GO:0016192
Eupl05g01745 412 SMART arf_gap_3 12 128 IPR001164 GO:0005096
Eupl05g01745 412 SUPERFAMILY ArfGap/RecO-like zinc finger 13 101 IPR037278 -
Eupl05g01745 412 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01745 Eupl-Chr5 42112596 42116378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01745 10 96 C2H2 Transcription Factor Family AT4G05330 45.977 2.42e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01745 K12492 - nnu:104604598 504.982