Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01744 ATGGAATCTCCACCGCAACCTCCATCACTTCTCTTGACGCCCTTGATGATCGCCATGGTTGGTATTATCTCCACAGCCATGGCAATTCTAGCGTACCATTTTATCCTCGTGAAATATTGTGTGCGTAGAAACGAAATGATCATACCGCAACCCATCCATGGGAACCAAATTGCAACTGGGGTGGAGGATAATGTTCTGGAAACCATCCCGATTCTCGCTTATTCGAGTAAGCAAGTAGGGTTGTTTCGTGTGGATCAGAGCGAATGTGCTGTTTGCTTAGGTGAATTAGAAGAAGGGGACGTTGTTCGTTTGTTGCCTAATTGTCGACATGCTTTTCATCTTCAATGCATCGATGAATGGTTCTTCTCTCATTCGAATTGTCCGGTTTGTCGATCGCCCATCGTGGAGCCCATGCCTCTAGTGTTTCCAATGCCAATTGGGGTAGAGGGAGAAACAGATGGAACATACCTTCTACCTCAATGTGCTGATCAAGAAGGTAGTACTGTTGATCAGGGTGATATTGCTAATGGTTGTGTCGGACGGGTGGGATCGAAAGGTTTACTTCGCCATTGTGCTTCTCTAATATTGCCTACTGAGAGAAAACCACCACCTTTGTCGACAGTTGTACTAAAGCGATCCTTGTCCATGGACCACTCTTATGTTTCTCTTACTATACAAGCAGACCTTGAAAGAGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCAAAGGCGGCTTTTTCGCGAAGCAGCTCGCATAGTGTAGGATCCTACAGACGCTTAGATCGTGCATCTTCCATGCTTATGAAGTCAATTTCCCGATTGCGGTTGGGTCAAGGTAGCGCGGCTGATGGAATTCTTCCCCATTGA 903 0.4518 MESPPQPPSLLLTPLMIAMVGIISTAMAILAYHFILVKYCVRRNEMIIPQPIHGNQIATGVEDNVLETIPILAYSSKQVGLFRVDQSECAVCLGELEEGDVVRLLPNCRHAFHLQCIDEWFFSHSNCPVCRSPIVEPMPLVFPMPIGVEGETDGTYLLPQCADQEGSTVDQGDIANGCVGRVGSKGLLRHCASLILPTERKPPPLSTVVLKRSLSMDHSYVSLTIQADLERDSSSSSSSSSSSSSSSSSSSSTSKAAFSRSSSHSVGSYRRLDRASSMLMKSISRLRLGQGSAADGILPH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01744 300 CDD RING-H2_EL5-like 88 131 - -
Eupl05g01744 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 137 IPR013083 -
Eupl05g01744 300 SMART ring_2 89 130 IPR001841 -
Eupl05g01744 300 MobiDBLite consensus disorder prediction 231 269 - -
Eupl05g01744 300 FunFam E3 ubiquitin-protein ligase ATL6 51 137 - -
Eupl05g01744 300 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Eupl05g01744 300 Pfam Ring finger domain 88 131 IPR001841 -
Eupl05g01744 300 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 135 IPR044675 -
Eupl05g01744 300 SUPERFAMILY RING/U-box 88 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01744 Eupl-Chr5 42107317 42108426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01744 17 135 C3H Transcription Factor Family AT5G17600 37.594 6.88e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01744 - - tcc:18598098 228.794