Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01740 ATGAAACCTCAAAACCGCAAATTACTAGACGAGGATGGGCCGCGCACCATCACATCACCTTCTCTGCCGCGAGATATCTTACTACCTCCTCTACTGCCAGCCACCAACACATCAACGGCTAGAAAATCCTTGAATCCCACTTCAGGCTTCGACTCGTCAATGGCTTTAACGGTTTTAGTACTCTTTAGCGCGCTATTCTTCATGGGTTTCTTCTCCGTGTACATCCGCCGCTTCGCTGAAGAGGATGCGAACGAGATCTCTCGCCGTAGACGACAGCAACGACGAACATCATCATCATCGTCGACGCCGTCAGGGGCCTCGCCCCACGGTCTGGACCCATCAACCGTTCGATCGCTGCCGCTCTTCGCTTATGATGGGAACGCGAAGGAGCCCGGAGATTGCGTGGTTTGCCTCAGTGAATTCGAAGAGAAAGAGTCCGTCAAATTAATTCCCTATTGTGGGCACGTCTTTCATCCACAGTGTATGGACATGTGGTTCTTATCTCATGCTTCGTGTCCTCTCTGTCGATCTACCCAGTTGTTTCCTCTGCCTTCTGTGAAGAAAGACGCTCGTTTGAATGTATTCGAGCAAAGATTTGATCAAGGTGTTAGAGATTCTCCGGAGAGATCAACGGTAGGATGTGGTGACACGTCGATAGAGAGACAAATAGAGATATTATCGGGTATGAGAAGGACCAGTAGCTGTTCAAGCTTAGGAGAGAGAGTGTCGTTACAGAGGAGCTCGAGCTTCTAA 753 0.4967 MKPQNRKLLDEDGPRTITSPSLPRDILLPPLLPATNTSTARKSLNPTSGFDSSMALTVLVLFSALFFMGFFSVYIRRFAEEDANEISRRRRQQRRTSSSSSTPSGASPHGLDPSTVRSLPLFAYDGNAKEPGDCVVCLSEFEEKESVKLIPYCGHVFHPQCMDMWFLSHASCPLCRSTQLFPLPSVKKDARLNVFEQRFDQGVRDSPERSTVGCGDTSIERQIEILSGMRRTSSCSSLGERVSLQRSSSF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01740 250 Pfam Ring finger domain 133 176 IPR001841 -
Eupl05g01740 250 SUPERFAMILY RING/U-box 126 183 - -
Eupl05g01740 250 PANTHER RING FINGER DOMAIN-CONTAINING 38 178 - -
Eupl05g01740 250 Coils Coil 76 96 - -
Eupl05g01740 250 CDD RING-H2_EL5-like 133 176 - -
Eupl05g01740 250 MobiDBLite consensus disorder prediction 85 114 - -
Eupl05g01740 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 180 IPR013083 -
Eupl05g01740 250 MobiDBLite consensus disorder prediction 96 111 - -
Eupl05g01740 250 MobiDBLite consensus disorder prediction 1 30 - -
Eupl05g01740 250 SMART ring_2 134 175 IPR001841 -
Eupl05g01740 250 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01740 Eupl-Chr5 42061902 42062981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01740 49 250 C3H Transcription Factor Family AT2G27940 42.523 4.12e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01740 - K10664 nnu:104604593 231.876