Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01735 ATGGCGAACGGCACCGATTCGGAGGAGTTTCTATTGTTGTCGGGGCCTCGAAACGGTCTGAAACGCGAGTTTGCTTTCGCCTTGAAGGTTCAGTCTGAGCTGTCTGGCACGCTTGGTCGGACCCGAGCGAGAAAGTTTCAGAACATCGCTTCTAATAACGGAGTTTCGCAGATTTCGAGCAATAAGAGATTTAAGAGCTCTGTTGCCAAGGAAGAACTGAAGTACGATGCGGTTAAGGAGGTGCCCAATAATGATTTGGTGAAATCTACCAGCGTGGAGGGACCCAAGAGCGATATCGCAAAACTGTTGAGCGAGGAGGAGGCCAAGAGCGATTCGGTTAAATCTCCGATCGTGGACGAGCTCAGAACCGACTTGGTCCAATCTCCAATTGCAGAGGAGCCCAAGAGCAATCCCGCGAACGATGGAACAAAATCTCATAGAGAAGAGGGAACTGGTGCGGAAACCGCAATGGTGATTGATGATAATAGCAAGGTACAGAATGCTTCACCGGGGAAATACCTGAAGCGGTATACTCGTTCAGCTTTGAAACCCAAGGCAGAGCCGATGGAGATGTTGGCAACTCCCACGAGTGTCAGTTCTGTGGTGTCGGAAGATGTTTGCAAGAACGAAGCCATCGCAGAAGGTGAAGGGAAAGGGGCCGATGTGGTTAGCCCATTGAGAACACCTCCAAATAAGAAGCTCGAAATGAAAATGTCGAAAAAGATTGCCGTGACCAAGTTTCCGTCCAGGATCCCTGAGCTTCTCGAGACTGGTATGCTTGAGGGATTGCCTGTCAATTACGTCTTTCGGGACAAGAAGAGAGCAGGACTTCAGGGAACCATAAAAGACCGTGGGATCTTGTGTTCCTGTACTTCCTGCCAAGGGTGCAAAGTTGTTACGCCTTTCCAATTTGAGAAGCATGCAGGAAGTACAAACAAACGTGCTGCGGATTATATTTACTTGGAGAACGGGAACAGCCTCCGCGAAGTATTGAATGCATGCAAGGATGCTCCTTTGGACACGTTGGAAGCAACGATTCAAAGCGCAATCTATTCTTCACCTGTAAAAAAAGCTACCGTTTGTCAGAGTTGCAAAGGACCTCTTCCTGCATCTCATTCTACGGAACTATGCAATTCATGTGTGGAATCAAAGAAATCTCAAGCAAGCCCAGCTCATACGATTGGTGCCAATGCTAGGTTGTCAAAGCCAGCCTTAACTCCAAAGTCATCTGACAGTGCTCCAAAGTGTGTCTCCTCACAAAATAGGAGTAAAGGGAAGCTAACAAGAAAGGATTTGCGATTGCATAAGTTGGTCTTTGAGGAAGATGGGTTACCAGACGGAACTGAACTAGCTTATTATATTCGTGGACAGAAATTGCTCGAGGGTTATAAAAAAGGCTTTGGAATATTCTGTGGTTGCTGCAATAGTGAGGTCAGCCCTTCACAGTTTGAAGCTCATGCTGGTTGGGCTTCACGCCGTAAACCTTACCTAAACATTTACACATCCAATGGGGTGTCACTTCATGAACTGTCAGTATCTCTATCAAAGGGTCGGAAGTTTTCTGCCAAGGACAATGATGATCTTTGCTCCATATGTGCTGACTTTGGGGATCTTTTGCTTTGTGATGGATGCCCCAGGGCCTTTCACAAAGATTGTGTGAGTCTATCAAACATTCCACGTGGTAAATGGTACTGTCCATATTGCCAAAATATGTACCAAAGAGAAAAATCTTGTGAGCACAATGCCAATGCAAAGGCAGCTGGGAGAGTTTCAGGAGTTGATCCTATAGAAGAGATAACCAAGCGCTGCATTCGTATTGTCAAAACACCAGAGGCTGAATTTGGTGGATGCGTGTTATGCAGATGCCATGGTTTTAGCAAATCAGGATTTGGTCCTCACACAGTTCTATTGTGCGATCAGTGTGAGAAGGAGTTTCATGTTGGCTGTTTGAAGGATCACAAAATGGGGGATCTAAAGGAATTGCCAAAAGGGGAGTGGTTTTGTTGCACAGATTGCAATAGGATTCATTCTGCTTTGCAGAAGTTGCTTGTTCGTGGATCAGAGAAACTCCCAGATTCTCTTTCACATGTTATAAAGAAGAAGCATGGGGAAAATGATTTGAATAACGATGCTGATCTTGATGTAAGATGGAGACTTCTTAGTGGGACAATTGCTTCTCCTGAGAGCAGATTGTTGCTTTCTAAGGCTGTTGCAATCTTCCATGACCGCTTTGACCCAATAGTTGATTCAAAAACAGGGCGTGACCTTATCCCATCCATGGTTTATGGACGGAATATAAGGGACCAAGAATTTGGAGGAATGTATTGTGCAGTATTGACAGTAAACTCATCTGTCGTATCAGCTGGGATTCTTCGAATTTTTGGACGGGAAGTCGCAGAACTTCCTTTAGTTGCTACAAGTAGTGATAACCAAGGACGGGGATATTTCCAGTCACTGTTTTCTTGCATTGAGAGACTGCTGGGGTTCTTGAATGTGAAGGACTTAGTGCTCCCAGCTGCTGATGAAGCAGAGTCCATATGGACCGAAAAATTTGGTTTCAAGAAGATGTCTGAAGACCAGCTGAGCAAGTACAAAATGGACTGCCAGATGATGACCTTCCAAGGGACAGCTATGCTACAGAAGCCGGTCCCCAAGTGTCGGATTGTTGGTAAATCAACCGAGGACAGCTGA 2691 0.4571 MANGTDSEEFLLLSGPRNGLKREFAFALKVQSELSGTLGRTRARKFQNIASNNGVSQISSNKRFKSSVAKEELKYDAVKEVPNNDLVKSTSVEGPKSDIAKLLSEEEAKSDSVKSPIVDELRTDLVQSPIAEEPKSNPANDGTKSHREEGTGAETAMVIDDNSKVQNASPGKYLKRYTRSALKPKAEPMEMLATPTSVSSVVSEDVCKNEAIAEGEGKGADVVSPLRTPPNKKLEMKMSKKIAVTKFPSRIPELLETGMLEGLPVNYVFRDKKRAGLQGTIKDRGILCSCTSCQGCKVVTPFQFEKHAGSTNKRAADYIYLENGNSLREVLNACKDAPLDTLEATIQSAIYSSPVKKATVCQSCKGPLPASHSTELCNSCVESKKSQASPAHTIGANARLSKPALTPKSSDSAPKCVSSQNRSKGKLTRKDLRLHKLVFEEDGLPDGTELAYYIRGQKLLEGYKKGFGIFCGCCNSEVSPSQFEAHAGWASRRKPYLNIYTSNGVSLHELSVSLSKGRKFSAKDNDDLCSICADFGDLLLCDGCPRAFHKDCVSLSNIPRGKWYCPYCQNMYQREKSCEHNANAKAAGRVSGVDPIEEITKRCIRIVKTPEAEFGGCVLCRCHGFSKSGFGPHTVLLCDQCEKEFHVGCLKDHKMGDLKELPKGEWFCCTDCNRIHSALQKLLVRGSEKLPDSLSHVIKKKHGENDLNNDADLDVRWRLLSGTIASPESRLLLSKAVAIFHDRFDPIVDSKTGRDLIPSMVYGRNIRDQEFGGMYCAVLTVNSSVVSAGILRIFGREVAELPLVATSSDNQGRGYFQSLFSCIERLLGFLNVKDLVLPAADEAESIWTEKFGFKKMSEDQLSKYKMDCQMMTFQGTAMLQKPVPKCRIVGKSTEDS* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01735 896 ProSitePatterns Zinc finger PHD-type signature. 529 568 IPR019786 -
Eupl05g01735 896 SUPERFAMILY FYVE/PHD zinc finger 616 672 IPR011011 -
Eupl05g01735 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 604 IPR013083 -
Eupl05g01735 896 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 769 859 IPR016181 -
Eupl05g01735 896 ProSiteProfiles Zinc finger PHD-type profile. 526 571 IPR019787 -
Eupl05g01735 896 MobiDBLite consensus disorder prediction 126 150 - -
Eupl05g01735 896 CDD PHD1_AIRE 528 568 - -
Eupl05g01735 896 PANTHER AUTOIMMUNE REGULATOR 55 883 - -
Eupl05g01735 896 Pfam Tify domain binding domain 462 511 IPR032308 -
Eupl05g01735 896 Pfam Tify domain binding domain 279 334 IPR032308 -
Eupl05g01735 896 FunFam PHD finger family protein 714 882 - -
Eupl05g01735 896 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 515 592 - -
Eupl05g01735 896 MobiDBLite consensus disorder prediction 403 423 - -
Eupl05g01735 896 MobiDBLite consensus disorder prediction 396 424 - -
Eupl05g01735 896 Pfam PHD-finger 529 570 IPR019787 -
Eupl05g01735 896 SUPERFAMILY FYVE/PHD zinc finger 516 571 IPR011011 -
Eupl05g01735 896 Gene3D - 721 881 - -
Eupl05g01735 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 675 IPR013083 -
Eupl05g01735 896 SMART PHD_3 619 673 IPR001965 -
Eupl05g01735 896 SMART PHD_3 528 569 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01735 Eupl-Chr5 41970980 41982041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01735 240 894 PHD Transcription Factor Family AT2G36720 50.137 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl05g01735 TDBD 8.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01735 - - nnu:104604586 1157.9