Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01725 ATGATTTCAGGTGAAACTTCATGTTTCGAAAATGGCTCACGAGGTTTGCAAATGTATGGTGTGACAGATGATGTGTTATCTTCGTCTCACGAGGGGAGTTCGAGTGCACAGACGAATTCTGGATCACTCCTCTACAACTTCTCAATTCTCAAAGACAAGGTTCATCAGGTGCAATCCATGGTCAACGTTGTTGTCTCTCCTGATCAAGGCCAGCCTCAGTCTGTTGCTGTTGCTGTTGCTATAGCTGGCATGGGCACTCTCATTCAAGAGATTATCGTTACTGCATCGTCCATGATGTTTGCTTGTCAACAGCTGGCTCTGATTGGTTCTGCTGGGGTCGACAACAATTCCATTAAGGTTCCTGATGGTGGTGTGTCTCAACCTAGCGGCGATCGGACGGTTCACGTAGAAGGCGGCGGCGGGCAAGGATTCTTTCCTGGTGAGAATCTTGATTGGTATGGTGATAACTATAATAACCATAACAATTATAATGCTAGTATTACCATTAGCAATAACAACAACAACAATGAGGTGGAAGAGAGGGAATTGTCGTATCATGTCAGAAATAATGAGGAATTACATGGTCTTTTGCCGACGAATTACGACATTATCGAGTTGGATGCGGCAGATCTATTGGCTAAATACACGCATTATTGCCAAATTTGTGGAAAAGGATTCAAGCGAGACGCGAATCTGAGGATGCACATGAGAGCACATGGAGATGAGTACAAGTCTACAGCTGCTCTAAGCAACCCCATGAAGAAACAAAGCAATTCAGAGGGATGTAAGGACTACTTGAAATTGCCTAGAAAATATTCTTGCCCACAGGAAGGGTGCAGGTGGAACAGGAAGCACGCCAAGTTCCAGCCATTGAAATCCATGATATGTGTAAAGAATCACTACAAGAGGAGCCACTGCCCCAAGATGTACATTTGCAATCGATGCAATCGGAAGCAATTTTCAGTGCTATCAGATCTACGAACACACGAGAAGCACTGCGGCGATCTCAAGTGGCAGTGTTCATGTGGAACGACGTTCTCTAGGAAAGATAAGCTTATGGGTCATGTAGCTTTGTTCATCGGTCACGCTCCGGCGGGGAATTCGTTCATGAAGCAAGGAAAACTTGAACAACATACAATCCAATTTGAGGATAGGTGA 1158 0.4473 MISGETSCFENGSRGLQMYGVTDDVLSSSHEGSSSAQTNSGSLLYNFSILKDKVHQVQSMVNVVVSPDQGQPQSVAVAVAIAGMGTLIQEIIVTASSMMFACQQLALIGSAGVDNNSIKVPDGGVSQPSGDRTVHVEGGGGQGFFPGENLDWYGDNYNNHNNYNASITISNNNNNNEVEERELSYHVRNNEELHGLLPTNYDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKSTAALSNPMKKQSNSEGCKDYLKLPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICNRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFIGHAPAGNSFMKQGKLEQHTIQFEDR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01725 385 SMART c2h2final6 310 332 IPR013087 -
Eupl05g01725 385 SMART c2h2final6 272 305 IPR013087 -
Eupl05g01725 385 SMART c2h2final6 217 239 IPR013087 -
Eupl05g01725 385 Pfam C2H2-type zinc finger 217 239 - -
Eupl05g01725 385 Gene3D Classic Zinc Finger 210 272 - -
Eupl05g01725 385 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 367 IPR044300 GO:0010044|GO:0010447
Eupl05g01725 385 Gene3D Classic Zinc Finger 308 358 - -
Eupl05g01725 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Eupl05g01725 385 SUPERFAMILY beta-beta-alpha zinc fingers 215 242 IPR036236 -
Eupl05g01725 385 FunFam Zinc finger protein 574 216 241 - -
Eupl05g01725 385 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01725 Eupl-Chr5 41759195 41760578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01725 40 368 C2H2 Transcription Factor Family AT5G22890 51.445 3.12e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01725 zf-C2H2_6 0.00059 CL0361