Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01703 ATGGAGATTCCAGAGGAAGTTGTGGGATCTAACGACCATGGCCACATCGTTAAGCGCAAGCGTACCAAACGCCAAAGGCCACCGTCTCCGCTTCCCTTTGGCATGGCTAGTAGCTCATCGAGCGGTGGTGGTGGTGGTGGTGGTAGTATCGGTAGTGGTAGTGGTGGTGGTGGTGGTGGAGATGGTGGTGGAGATGATCGAAGCTCTACGAGCCCTACGACGTCGGCCGAATTAACCGAGAGTACCGAGGAAGAAGAAGACATGGCGAATTGCCTAATTCTCTTAGCTCAAGGGCATAATCGGGACGGTTCAAAGCGAATTAATGAGGAGGGTGGTGTGATGGAAAGGTTTAATAGCCGACGATTCACCGAAGCAACCACGACGACGACTAATGTCAAAGCCGGATTCTATGTGTACGAGTGCAAGACATGTAACCGATGTTTCCCTTCATTTCAAGCATTGGGTGGGCATAGAGCGAGTCACAAGAAGATTAAGGCTATGGTTGAAGAGAAGAAAGCATTGGCTTTAATGGAAGATCATGAAACCCAATTCAATAACAATTGCACACCTCTTTCTCTCCAAATGGTCAATAGAGTTCCCTATAGCAATAACAAGTCCAGGGTCCATGAGTGTTCTATATGTGGTTCTGAATTCTCATCCGGCCAAGCCTTAGGAGGTCACATGAGACGACATAGAACATCTACGGCCACGACCACAACGACCACAACCACAACCACAACCATGTCACCAATTACTACATCGGAATCTCAAGAGCCCGAGAAGCAAAGAAATGTCCTAACATTGGATCTCAACCTTCCAGCACCAGAAGACGATCGCGAGTCGAAATTCCAATTCGCTTCGAAACAACAACCGCTCGTGTTCTCCGCCGCTGCTCTGGTGGATTGCCATTACTAA 915 0.4863 MEIPEEVVGSNDHGHIVKRKRTKRQRPPSPLPFGMASSSSSGGGGGGGSIGSGSGGGGGGDGGGDDRSSTSPTTSAELTESTEEEEDMANCLILLAQGHNRDGSKRINEEGGVMERFNSRRFTEATTTTTNVKAGFYVYECKTCNRCFPSFQALGGHRASHKKIKAMVEEKKALALMEDHETQFNNNCTPLSLQMVNRVPYSNNKSRVHECSICGSEFSSGQALGGHMRRHRTSTATTTTTTTTTTTMSPITTSESQEPEKQRNVLTLDLNLPAPEDDRESKFQFASKQQPLVFSAAALVDCHY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01703 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Eupl05g01703 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Eupl05g01703 304 PANTHER ZINC FINGER PROTEIN ZAT5 26 293 - -
Eupl05g01703 304 MobiDBLite consensus disorder prediction 1 15 - -
Eupl05g01703 304 MobiDBLite consensus disorder prediction 1 86 - -
Eupl05g01703 304 MobiDBLite consensus disorder prediction 32 47 - -
Eupl05g01703 304 MobiDBLite consensus disorder prediction 224 262 - -
Eupl05g01703 304 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Eupl05g01703 304 Pfam C2H2-type zinc finger 138 163 - -
Eupl05g01703 304 Pfam C2H2-type zinc finger 208 233 - -
Eupl05g01703 304 Gene3D Classic Zinc Finger 136 231 - -
Eupl05g01703 304 SMART c2h2final6 139 161 IPR013087 -
Eupl05g01703 304 SMART c2h2final6 209 231 IPR013087 -
Eupl05g01703 304 MobiDBLite consensus disorder prediction 231 262 - -
Eupl05g01703 304 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Eupl05g01703 304 SUPERFAMILY beta-beta-alpha zinc fingers 138 231 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01703 Eupl-Chr5 41489365 41490931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01703 1 304 C2H2 Transcription Factor Family AT5G04390 39.295 8.76e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01703 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01703 - - nnu:104587339 305.449