Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01701 ATGGAGAACCAAGCATTCCAAACTCCTAGCGACTTCGGCTTCCATGATTTTATCAACGATAGCAACTTCGAGCAATTCATCGACCTCATGAGAGGAGAAAATACAGACCCCATCAACCATTACAACCCAAATTATGATGGTGAGCTTATGTTCAACAGTGAATTGGTCGATAATCAGTACTTTTGTCCCACCCCAGGGGACATGTTCGATTTCAACTCCACGAGTACTACTTCCGATCCCAATTCGATTCTCAATTCTCTACCTCCCTTTAGTGGAGATGTTGATGGAGCTGAGGATGAAGAGAATGACGGTTATGATTCTTCTGCAACTACAACAACTAGACCGACGAAGAGGACAACAAATGATCGTTCGAGAACGTTGATTTCAGAAAGAAAAAGGAGGGGCCGAATGAAGGAGAAGCTCTATGCATTGCGTTCCTTGGTTCCTAACATAACCAAGATGGATAAGGCGTCGATCGTAGGAGATGCAGTCTTATACGTGCAAGAGTTGCAAATGCAAGCTAAGAAGCTAAAAGCTGAAATCGCGGGGCTAGAATCATCGTTAAAAGGAGGAGCAGGAAGATTTCATGAGAACATAAAGAAGACCCAAGTTGCAGAAAACAGGCATCCAATTTGCAAGGACATAGTGCAGATGGATGTGTTTCAAGTAGAGGAAAGAGTGTTTTATGTGAGGTTGGTAAGCAACAAGGGAGAAGGGGTGGCAGTAGCTCTATACAAGGCCCTTGAATCCCTAACTTTCTTCGACGTTCGAAGCTCCAACTTCGCCGCGGTTTCTGAGAGATTCGAGTTAACATTTACCGTCAACGTTAAAGAATGTGGGGAAGAGATGAACTTGTCAACCTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACCTTTAACTCCCTAA 930 0.4409 MENQAFQTPSDFGFHDFINDSNFEQFIDLMRGENTDPINHYNPNYDGELMFNSELVDNQYFCPTPGDMFDFNSTSTTSDPNSILNSLPPFSGDVDGAEDEENDGYDSSATTTTRPTKRTTNDRSRTLISERKRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQAKKLKAEIAGLESSLKGGAGRFHENIKKTQVAENRHPICKDIVQMDVFQVEERVFYVRLVSNKGEGVAVALYKALESLTFFDVRSSNFAAVSERFELTFTVNVKECGEEMNLSTLKLWVTGALLNQGFEFKTPLTP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01701 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Eupl05g01701 309 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983
Eupl05g01701 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 185 IPR036638 GO:0046983
Eupl05g01701 309 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 299 - -
Eupl05g01701 309 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
Eupl05g01701 309 Gene3D - 113 187 IPR036638 GO:0046983
Eupl05g01701 309 SMART finulus 127 176 IPR011598 GO:0046983
Eupl05g01701 309 Coils Coil 167 187 - -
Eupl05g01701 309 MobiDBLite consensus disorder prediction 75 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01701 Eupl-Chr5 41447466 41448978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01701 5 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.167 1.48e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g01701 HLH 6.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01701 K26214 - ming:122075298 409.453