Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01700 ATGGACAACCAAGCAGCATTCCAAACTCCTAGCGACTTCGGCTTTCATGATTTTATCAACGATAGCAACTTCGACCAATTCATTGACCTCATTCGAGGAGAAAACACAGACCCCATCAACAATTACAACCCAAATTATGACGGTGAGCTTATGTTCAATGGTGAATTGGTCGATAACAAGTACTTTTGTCCCACCCCAGGAGAAGTATTCGATTTCAACTCCACGAGTACTACTTCCGATCCCAATTCGATTCTGAATTCTTTACCTCCCTTTAGTGGAGATGTTGATGGAGCTGGGGATGAAGAGAATGACGGGGATGATTCTTCTGCAACTACAACAACTACACCGATGAAGAGGACAACAGTTGATCGTTCGCGAACGTTGATTACAGAAAGGAAAAGGAGGGGCCGAATGAAGGACAAGCTCTATGCATTGCGTTCCTTGGTTCCTAACATAACCAAGATGGATAAGGCGTCGATCGTAGGAGATGCAGTCTTATACGTGCAAGAGTTGCAAATGCAAGCTAAGAAGCTAAAAGCTGAAATCGCGGGGCTAGAATCATCGGTAAAAGGAGGAGCGGGAAGATTTCATAACATAAAGAAGACCCATGTTGCAGAAAACAGGCATCCAATTTGCAAGAACATAGTGCAGATGGATGTGTTTCAAGTAGAGGAAAGAGTGTTTTATGTGAGGTTGGTAAGCAACAAGGGAGAAGGGGTGGCAGTAGCTCTATACAAGGCCCTTGAATCCCTAACTTTCTTCGACGTTCGAAGCTCCAACTTCGCCGCGGTTTCTGAGAGATTCGAGTTAACATTTACCGTCAACGTTAAAGAACGTGGGGAAGAGATGAACTTGTCAACCTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACCTTTGACTCCCTAA 930 0.4452 MDNQAAFQTPSDFGFHDFINDSNFDQFIDLIRGENTDPINNYNPNYDGELMFNGELVDNKYFCPTPGEVFDFNSTSTTSDPNSILNSLPPFSGDVDGAGDEENDGDDSSATTTTTPMKRTTVDRSRTLITERKRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQAKKLKAEIAGLESSVKGGAGRFHNIKKTHVAENRHPICKNIVQMDVFQVEERVFYVRLVSNKGEGVAVALYKALESLTFFDVRSSNFAAVSERFELTFTVNVKERGEEMNLSTLKLWVTGALLNQGFEFKTPLTP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01700 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 186 IPR036638 GO:0046983
Eupl05g01700 309 MobiDBLite consensus disorder prediction 73 89 - -
Eupl05g01700 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Eupl05g01700 309 Coils Coil 168 188 - -
Eupl05g01700 309 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 118 188 - -
Eupl05g01700 309 SMART finulus 128 177 IPR011598 GO:0046983
Eupl05g01700 309 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Eupl05g01700 309 Gene3D - 114 188 IPR036638 GO:0046983
Eupl05g01700 309 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 299 - -
Eupl05g01700 309 MobiDBLite consensus disorder prediction 73 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01700 Eupl-Chr5 41433967 41435407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01700 6 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.247 6.28e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g01700 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01700 K26214 - ming:122075298 390.578