Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01697 ATGGAGAGCGGTTTCGAGGCTCAATTGTCTTCCCATGGGTACGAATTTATCAAATCTAAAGAGAAAGATTCGTCGCTAATAGAGCTGGGATCAGGGAATTTCGGGTGTACACATTATAGAAGGAGATGCAAGATCAGGGCCCCTTGTTGCAACGAAATCTTCGATTGCAGGCATTGCCATAACGAAGCAAAGAATTCAATGGAAGTTGATACTCTGGATCGACACGATATTCCTCGCCACGAAATTAAAAAGGTCATCTGTTCCTTGTGTGGCACAGAACAAGATGTTCAACAGAATTGTATCAACTGTGGGGTCTGCATGGGCAAGTACTTCTGTGCAAAATGCAATTTTTTCGATGACAATATTTCAAAGAACCAATTCCACTGCGATGGATGTGGAATATGCAGAACTGGAGGCGAGGAGAATTTTTTCCACTGTACTAAATGTGGATGTTGTTATGCAAGGTTGTTGAAGGATGCCCACCGTTGTGTAGAAAGAGCAATGCACCACAACTGCCCCGTCTGCTTTGAGTATCTCTTTGATTCCACAAAAGACATTAGTGTCTTACAATGCGGGCACACAATACATTTGGACTGCTTGAAAGAGATGGAGCTGCATTTTCAGTTTGCGTGTCCCGTTTGCTCAAGATCTGTCTGCGATATGTCCAGAGTTTGGGAAAAGCTTGACCAGGAGGTTGCTTCTACACCCATGCCCGAAATGTACCAGAACAAGATGGTTTGGATCCTCTGCAATGACTGTGGGACAACATCCGAGGTCCATTTCCATATCGTGGCACACAAGTGCCAAAGCTGCAACTCCTACAATACTAGGCAGACCAGAGGGGCACCTGCTTCATGCTCATCGAGTATTTGA 873 0.4479 MESGFEAQLSSHGYEFIKSKEKDSSLIELGSGNFGCTHYRRRCKIRAPCCNEIFDCRHCHNEAKNSMEVDTLDRHDIPRHEIKKVICSLCGTEQDVQQNCINCGVCMGKYFCAKCNFFDDNISKNQFHCDGCGICRTGGEENFFHCTKCGCCYARLLKDAHRCVERAMHHNCPVCFEYLFDSTKDISVLQCGHTIHLDCLKEMELHFQFACPVCSRSVCDMSRVWEKLDQEVASTPMPEMYQNKMVWILCNDCGTTSEVHFHIVAHKCQSCNSYNTRQTRGAPASCSSSI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01697 290 Pfam Zinc-ribbon 219 277 IPR039512 -
Eupl05g01697 290 SUPERFAMILY RING/U-box 170 220 - -
Eupl05g01697 290 SMART ring_2 172 214 IPR001841 -
Eupl05g01697 290 ProSiteProfiles Zinc finger CTCHY-type profile. 107 171 IPR017921 -
Eupl05g01697 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 216 IPR013083 -
Eupl05g01697 290 Pfam CHY zinc finger 36 117 IPR008913 GO:0008270
Eupl05g01697 290 FunFam RING finger and CHY zinc finger domain-containing protein 1 243 288 - -
Eupl05g01697 290 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 280 - -
Eupl05g01697 290 ProSiteProfiles Zinc finger CHY-type profile. 29 105 IPR008913 GO:0008270
Eupl05g01697 290 SUPERFAMILY CHY zinc finger-like 32 107 IPR037274 GO:0008270
Eupl05g01697 290 Pfam Ring finger domain 171 214 IPR001841 -
Eupl05g01697 290 SUPERFAMILY Zinc hairpin stack 108 165 IPR037275 -
Eupl05g01697 290 ProSiteProfiles Zinc finger RING-type profile. 172 215 IPR001841 -
Eupl05g01697 290 Gene3D - 243 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01697 Eupl-Chr5 41384070 41390712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01697 34 289 C2H2 Transcription Factor Family AT3G18290 37.262 1.48e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01697 K10144 - msin:131251270 561.992