Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01694 ATGTTGTCCTTCACTTCATCTTGTCTGGGCAGACCCCTCTTCTCCGATTTCCTCCTCTCCTCATCTGCTCTCTCTTCTTCGCCCAAACCCTCACTCAGATTCTTCTGCTCTTCGAACCCTACTAACCCTTACCCTAACATGTCTGGTAATCGAACGGTCGCTGACGTCCTCATGGCTGCCGCTCGAGCGGCTGCGCAGAAGAAAGGTCGTCCTTCTCCACCTAAGAAGCAAAAAACCCTAGAAGCAGATGAACCCCCAAAGGATCAGAGCCCTAAACCCAAAGAACCCAGTCCGAAGGCGGCGAAGAAGGATGATCGCTCGTTCAGTCTCGAAGAAAGGGTCGGTCAATTGAAAAAGAAGGGATCGGATTTTAAGCCGAAATCCGCTGCGTATTGGAAAGATGGAGAACCGGTGCCATTTTTGTTTCTTGCTCGGGCATTTGATCTGATCGCTAATGAATCAGGTCGAATCACGATCACGGAGATTCTTTGTAATGTTTTCCGGACTGTGATTGCTACGACGCCTGGGGATTTGATTGCCATTGTTTATCTTTCCGCGAACAAGATTGCTCCTTCTCACGAGGGCGTGGAGCTCGGGATTGGAGATTCGGCCATTATAAAGGCACTAGCTGAAGCTTATGGAAGGAAGGAGGAGCACATTAAAAACCAGCTCAAGGCGCTGGGGGACTTGGGCCTTGTCGCAAAAGCAAGCCGTTCATCTCAGACTGTGATGTTCAAGCCTCCTCCATTAACTGTTGTCAAGGTTTTGGATACCTTTCGTGTCATTGCCAAGGAATCTGGGAAGGACAGTCAGGACAAGAAAAGGAACCATATCAAAGGACTTCTTGTTGCAGCCACTGATTGTGAACCTCAGTATTTAATTCGTCTACTGCAGTCAAAGTTGCGAATTGGTTTGGCAGAGCAGACTCTCTTAGTAGCTTTAGGGCAAGCAGCTGTATATTCTGAAAAACATTCAGCTCCACCTTCACAAATTCAGTCTCCTCTTGAAGAGGCTGCAAAAATTATCAAACAAGTGTACTCTGTACTTCCGAACTATGATAAAATTGTCACCGCTCTTCTCAGTGGTGGTGTGTGGCAGCTCTCAAAGACATGTAGCTTTACATTGGGTGTTCCAGTTGGACCTATGCTAGCTAAACCAACTAAAGGGGTATCCGAGATTCTGGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGATACATTACATGGAGGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAATACTGGAAAGTTTCCTGATGTTGTCAATTCAGTGGAAAGGTTCAAGAAGTCCTCTATACGATCATTTGTTCTGGATTGCGAAGTTGTTGCTTATGACCAAGAAAAGCAGAGAATTTTGCCTTTCCAGGTCCTTAGTACTCGTGCTCGTAAAGGTGTGGTCATGAGTGACATAACAGTTAAAGTTTGCATCTTTGCTTTTGATATTTTGTATCTCAATGACCAATCACTACTCCAGGAACAACTTCAAGTGCGTAGAGAGCATCTTTATAATTCATTCGAGGAAGTACCAGGAGAGTTTCAGTTTGCCACAGCAATAACATCAAATGATCTCGAAGAAATACAAAAATTTCTTGAAACTGCCGTTAACAGCAGTTGTGAAGGTTTGATCATCAAAACATTAAATAGAGATGCTACTTATGAGCCTTCCAAGCGGTCAAATAACTGGTTGAAATTGAAAAAAGATTACATGGACAGTGTCGGAGACTCGCTAGATTTAGTACCTATTGCTGCATTCCATGGCCGTGGGAAACGCACAGGTGTTTATGGGGCCTTTCTCCTTGCTTGCTATGATGATAAGAACGAAGAATACCAAAGCATATGCAAGATAGGCACTGGGTTTTCTGAAGCAGTGCTTGAAGAGCGTTCTGCCAGTCTTCGTCCAAAAGTGATTCCCAAACCGAAGCCATACTACAGGTACGCAGATACAATCAATCCAGATGTATGGTTTGAACCGACTGAGGTTTGGGAGGTGAAAGCCGCAGATTTGAGTATCAGTCCTGTTCATCGTGCTGCCACTGGTGCTGTGGATCCAAATAAGGGCATCTCTCTCCGGTTTCCACGTCTGCTTCGTGTCCGAGAAGACAAGAGCCCAGAGCAAGCCACATCATCTGATCAGTTCCTCTACATCCGTGTGATTGGTTTCATGCATTTTGCTATGTCAGTTGTAGGATTGGTCCTGTTGTCGTTTTACATCATTTGGTTGGTATCAGAGCGACCCCTTGTTCTAATGGGACTCGACGATGGCTTCAACTTGACTAATCTCGTGGATGGTGTTCTTGAGCATCAAGCCGTATCGATAACTATGTTTGAGACCTTACTCAGTGATTGTTGCAGGATGTGTAGGCTAACGTTGACTTAG 2436 0.4495 MLSFTSSCLGRPLFSDFLLSSSALSSSPKPSLRFFCSSNPTNPYPNMSGNRTVADVLMAAARAAAQKKGRPSPPKKQKTLEADEPPKDQSPKPKEPSPKAAKKDDRSFSLEERVGQLKKKGSDFKPKSAAYWKDGEPVPFLFLARAFDLIANESGRITITEILCNVFRTVIATTPGDLIAIVYLSANKIAPSHEGVELGIGDSAIIKALAEAYGRKEEHIKNQLKALGDLGLVAKASRSSQTVMFKPPPLTVVKVLDTFRVIAKESGKDSQDKKRNHIKGLLVAATDCEPQYLIRLLQSKLRIGLAEQTLLVALGQAAVYSEKHSAPPSQIQSPLEEAAKIIKQVYSVLPNYDKIVTALLSGGVWQLSKTCSFTLGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVNSVERFKKSSIRSFVLDCEVVAYDQEKQRILPFQVLSTRARKGVVMSDITVKVCIFAFDILYLNDQSLLQEQLQVRREHLYNSFEEVPGEFQFATAITSNDLEEIQKFLETAVNSSCEGLIIKTLNRDATYEPSKRSNNWLKLKKDYMDSVGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDDKNEEYQSICKIGTGFSEAVLEERSASLRPKVIPKPKPYYRYADTINPDVWFEPTEVWEVKAADLSISPVHRAATGAVDPNKGISLRFPRLLRVREDKSPEQATSSDQFLYIRVIGFMHFAMSVVGLVLLSFYIIWLVSERPLVLMGLDDGFNLTNLVDGVLEHQAVSITMFETLLSDCCRMCRLTLT* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01694 811 FunFam DNA ligase 590 736 - -
Eupl05g01694 811 ProSitePatterns ATP-dependent DNA ligase signature 2. 559 585 IPR016059 GO:0003909
Eupl05g01694 811 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 67 731 - -
Eupl05g01694 811 CDD Adenylation_DNA_ligase_I_Euk 370 588 - -
Eupl05g01694 811 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 123 371 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl05g01694 811 Gene3D DNA ligase/mRNA capping enzyme 410 535 - -
Eupl05g01694 811 CDD OBF_DNA_ligase_I 593 731 - -
Eupl05g01694 811 MobiDBLite consensus disorder prediction 62 112 - -
Eupl05g01694 811 Pfam ATP dependent DNA ligase domain 381 585 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl05g01694 811 FunFam DNA ligase 116 383 - -
Eupl05g01694 811 NCBIfam ATP-dependent DNA ligase 197 732 IPR000977 GO:0003910|GO:0005524|GO:0071897
Eupl05g01694 811 Gene3D - 115 383 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl05g01694 811 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 373 591 - -
Eupl05g01694 811 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 405 413 IPR016059 GO:0003909
Eupl05g01694 811 ProSiteProfiles ATP-dependent DNA ligase family profile. 487 623 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl05g01694 811 MobiDBLite consensus disorder prediction 74 112 - -
Eupl05g01694 811 SUPERFAMILY Nucleic acid-binding proteins 593 733 IPR012340 -
Eupl05g01694 811 Gene3D - 391 589 - -
Eupl05g01694 811 Gene3D - 590 737 IPR012340 -
Eupl05g01694 811 FunFam DNA ligase 381 587 - -
Eupl05g01694 811 Pfam ATP dependent DNA ligase C terminal region 610 721 IPR012309 GO:0003910|GO:0006281|GO:0006310
Eupl05g01694 811 Pfam DNA ligase N terminus 139 314 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01694 Eupl-Chr5 41317429 41355714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01694 47 732 Core DNA Replication Machinery Family AT1G08130 68.144 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01694 K10747 - msin:131228527 1124.77