Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01691 ATGCTCCTTATCACCTGCATTCTCCTAATTTGTCTCCTAAGCTTCTTTTCTCCCATCATCAGAGCAACCCATCACCTCAACCTCACTCTTCCCCACCAACATCCCGACCCTGAAGCAGTTGTTCAAGAAGTACAAAGGAGAGTGAATGTGTCCGTCACGAGGAGGGAAATGTTGGGGGTTTACGAGAAGGACCAGTCCTCTTGTCAGACCGGTAACCCCATTGACGACTGTTGGAGGTGCGACTCTAACTGGCAAGCTAACCGTCAACGGCTTGCCGAATGCGGGATAGGGTTCGGTCAGGATGCCCTTGGAGGAAAGGGCGGTCAGATCTATATGGTCACTGATTCATCGGACCGTGACCCAGTCAACCCTACGCCCGGGACTCTGAGATACGCCGTGATCCAAACCGAACCCCTCTGGATTGTCTTCTCAGGCAACATGCTTATAAAGCTTAAACAAGAGCTAATTCTTAACAGTTTCAAGACAATCGACGGCCGCGGTGCTAACGTTCACATCGTGGGCGGGGGATGTATAACCCTCCAGTACATTAGCAATGTCATCATCCACAACATTCACGTCCACCACTGCTACTCATCCGGCAACGCTAACGTGCGATCGAGCCCTACCCATTACGGATGGCGCACGAAATCGGACGGCGACGGGATCTCTATCTTCGGTTCGAGTAAAATATGGATCGACCACTGCTCCCTGTCTTACTGCAGGGATGGGCTGATCGATGCCATCATGGGGTCCACAGGGATCACAATCTCTAACAATTACTTCTCGCATCATAACGAGGTGATGCTGCTCGGTCATAGCGACGGCTATGTATTGGACAAGGGAATGCAGGTGACCCTGGCGTTCAACCACTTCGGTGAGGCCCTGGTTCAGAGAATGCCCAGGTGTCGACAAGGCTACATCCACGTCGTTAATAACGATTTCACACAATGGGAGATGTACGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGGAACCGCTACACTGCGCCAACCAACCCGAACGCTAAGGAGGTGACGAAGCGCGTGGACACGAAAGATGGAGATTGGACGGATTGGAATTGGAGGACAGAGGGGGATATAATGGTGAACGGAGCTTTCTTCGTGCCGTCCGGGGAGGGGCTTGGTTTTAAGTTTGCCAAGGCTTCTAGTGTGGAGCCCAAATCGGTTGGGCTCATCGACCGGCTAACCATGAACGCTGGTGTCTGGGGTAACAGGGACAACAGCATGAGCATATCGTACCCTGGATTCAATGATGGTGGGACCGGCACAGGCTCTGGGGTGGGGTCTGGTGGGGGAGGAGATGCAGACTTCTTTGGAATGATATTCGGGAGCGGCGCTCCACCGCCACCTCCTATCTTCTTTTCTTTCCTACTTATGCCTTGTCTATTGATTCTGTACACTGAACTCGTTCCATTATTGATACTATTATAA 1461 0.5222 MLLITCILLICLLSFFSPIIRATHHLNLTLPHQHPDPEAVVQEVQRRVNVSVTRREMLGVYEKDQSSCQTGNPIDDCWRCDSNWQANRQRLAECGIGFGQDALGGKGGQIYMVTDSSDRDPVNPTPGTLRYAVIQTEPLWIVFSGNMLIKLKQELILNSFKTIDGRGANVHIVGGGCITLQYISNVIIHNIHVHHCYSSGNANVRSSPTHYGWRTKSDGDGISIFGSSKIWIDHCSLSYCRDGLIDAIMGSTGITISNNYFSHHNEVMLLGHSDGYVLDKGMQVTLAFNHFGEALVQRMPRCRQGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPTNPNAKEVTKRVDTKDGDWTDWNWRTEGDIMVNGAFFVPSGEGLGFKFAKASSVEPKSVGLIDRLTMNAGVWGNRDNSMSISYPGFNDGGTGTGSGVGSGGGGDADFFGMIFGSGAPPPPPIFFSFLLMPCLLILYTELVPLLILL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01691 486 Pfam Pectate lyase 152 335 IPR002022 -
Eupl05g01691 486 Gene3D - 71 412 IPR012334 -
Eupl05g01691 486 SUPERFAMILY Pectin lyase-like 65 393 IPR011050 -
Eupl05g01691 486 PANTHER PECTATE LYASE 18-RELATED 27 412 IPR045032 GO:0030570
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Eupl05g01691 486 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Eupl05g01691 486 FunFam Pectate lyase 71 413 - -
Eupl05g01691 486 SMART amb_all 146 343 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01691 Eupl-Chr5 41285997 41289664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01691 1 485 Polysaccharide Lyase AT3G53190 64.898 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01691 K01728 - nnu:104604548 766.148