Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01690 ATGCAAGAAGAAACAATGCGTAAAGGACCTTGGCTTGAAGAGGAAGACGAGCGATTAGCTGCTTTTGTAACCTTAATGGGGGAGCGACGATGGGACTCCATAGCGAGAACATCAGGACTGAAGAGGAGTGGCAAGAGTTGCAGGTTGCGATGGATGAACTATCTGCGTCCTAATCTTAAGCATGGTCGAATGACTGTTGAAGAGGAGCATATGATACTTCAACTTCATGAACGCTGGGGTAACAAGTGGTCAAGAATCGCTCGTTGGTTGCCAGGAAGAACTGATAATGAGATTAAGAACTACTGGAGAAGTTATCTAAGAAAGAAAGCACAAACTCAAGAACAAGAGAAGATTATGCAAAGAGAAATAGACAATGCAACGAGTGCAACAGAAGAAGGTGATCTAAGCATCCAAACAACTAGCTTTGAATATTGTGGGTCTGTCGAGGATCAGGATATATTAAGAACATCAGAGCACTGTGTCGATGTTTTTGGATTCTCAGACTGCGCATTTGCAATTTCACCGTACGAAGCTCGTATGTCGGATTGGATATCAGGATCATCAAATGATCAAGATGAATTGAAACATCATGGAGAATGCAACATGTTGGATACTTGGTCTTGTTGTCCGGAATGGATTGCCAGAGAAGGAGATGGTATATGGGACTATTGTTCAGGCTCTCTATGGGGATATGGAGCAAATTAA 705 0.4255 MQEETMRKGPWLEEEDERLAAFVTLMGERRWDSIARTSGLKRSGKSCRLRWMNYLRPNLKHGRMTVEEEHMILQLHERWGNKWSRIARWLPGRTDNEIKNYWRSYLRKKAQTQEQEKIMQREIDNATSATEEGDLSIQTTSFEYCGSVEDQDILRTSEHCVDVFGFSDCAFAISPYEARMSDWISGSSNDQDELKHHGECNMLDTWSCCPEWIAREGDGIWDYCSGSLWGYGAN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01690 234 Coils Coil 109 129 - -
Eupl05g01690 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Eupl05g01690 234 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Eupl05g01690 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Eupl05g01690 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 123 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl05g01690 234 Gene3D - 64 133 - -
Eupl05g01690 234 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Eupl05g01690 234 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Eupl05g01690 234 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Eupl05g01690 234 SMART sant 60 108 IPR001005 -
Eupl05g01690 234 SMART sant 7 57 IPR001005 -
Eupl05g01690 234 CDD SANT 63 106 IPR001005 -
Eupl05g01690 234 Gene3D - 1 61 - -
Eupl05g01690 234 CDD SANT 10 55 IPR001005 -
Eupl05g01690 234 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Eupl05g01690 234 FunFam Myb transcription factor 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01690 Eupl-Chr5 41277951 41278955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01690 1 115 MYB Transcription Factor Family AT5G59780 62.609 8.44e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g01690 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01690 K09422 - psom:113311973 290.426