Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01660 ATGGTAACTAGAGGGATTACTAAAGAAGATGGGGAGAAGAAACCGGCAAGTTTTTCAAAGGGAGGAGCTACGAGATCGTGGGGGACGACATTTTCGGGACAATCGATCTCGACGAGCGGAAGTGCGGGGTCTCCGTCGAGCCGAAGCGACCTGGCGATTGCGACACCGGCCAGCGAGGACACTTTTATTAGATTGAATCACCTGGATATTCAGGGAAACGATGTTGGATCTCAAGGCGCCGTTGTTGGCAAGAAGAAGAAGAGAGGTCAACGGGCAATAGGAGGTGATAAGAGTGGTAGGGGACTACGCCAATTCAGCATGAAAGTCTGCGAGAAAGTGGAAAGCAAGGGTAGAACCACATACAATGAGGTCGCAGACGAACTTGTAGCCGAATTTGCAGATCCTAGCAATAATCTAGCATCTCCAGACCAGCAACAATACGATGAGAAAAATATAAGGCGGAGAGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTTTGTCTAAGGATAAGAAAGAAATACAATGGAAGGGTCTGCCTCGCACCAGCCTAAATGATATTGAAGAGCTAAAGGCAGAACGTCTTGGAATGAGAAGCAGGGTTGAAAAGAAAGCTGCCTATTTGCAAGAACTAGAGGAACAATTCGTAGGTCTTCAGAACCTTATACAAAGAAATGAACAATTATATGGCTCAGGAGATGCACCTATGGGGGGTGTGGCTTTACCTTTTATTCTGGTTCAGACACGTCCACATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAACTGGTGCATTTTGACTTCAATAGCACCCCTTTTGAGCTACATGACGACAATTATGTTCTCAAAGCAATGAGATTTTGTGAAAGACCACAGGACGACAATAGTGCACACGATTCTACTGCAAATGAAGGTGAGGGTTCCAGCATGCTTGCCATGTATCAACCCAACATACCACATCCCTTGAGGTCGAATGTTGCAGGTAGACCTCCCACTTCACCCCCTCTTCCAGGAATCCTAAAAGCACGTGCCAAACATGAGCATTAA 1056 0.4583 MVTRGITKEDGEKKPASFSKGGATRSWGTTFSGQSISTSGSAGSPSSRSDLAIATPASEDTFIRLNHLDIQGNDVGSQGAVVGKKKKRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNNLASPDQQQYDEKNIRRRVYDALNVLMAMDILSKDKKEIQWKGLPRTSLNDIEELKAERLGMRSRVEKKAAYLQELEEQFVGLQNLIQRNEQLYGSGDAPMGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMRFCERPQDDNSAHDSTANEGEGSSMLAMYQPNIPHPLRSNVAGRPPTSPPLPGILKARAKHEH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01660 351 MobiDBLite consensus disorder prediction 74 98 - -
Eupl05g01660 351 MobiDBLite consensus disorder prediction 22 51 - -
Eupl05g01660 351 MobiDBLite consensus disorder prediction 315 351 - -
Eupl05g01660 351 SUPERFAMILY E2F-DP heterodimerization region 186 302 IPR037241 -
Eupl05g01660 351 PANTHER TRANSCRIPTION FACTOR DP 23 328 IPR015648 GO:0005667|GO:0051726
Eupl05g01660 351 Coils Coil 210 230 - -
Eupl05g01660 351 Gene3D Transcription factor DP 186 317 IPR038168 -
Eupl05g01660 351 SMART DP_2 187 349 IPR014889 -
Eupl05g01660 351 MobiDBLite consensus disorder prediction 1 51 - -
Eupl05g01660 351 CDD DP_DD 185 288 IPR014889 -
Eupl05g01660 351 Gene3D - 93 185 IPR036388 -
Eupl05g01660 351 SMART E2F_TDP_2 97 180 IPR003316 GO:0005667|GO:0006355
Eupl05g01660 351 SUPERFAMILY "Winged helix" DNA-binding domain 100 181 IPR036390 -
Eupl05g01660 351 MobiDBLite consensus disorder prediction 1 16 - -
Eupl05g01660 351 Pfam Transcription factor DP 188 318 IPR014889 -
Eupl05g01660 351 FunFam Transcription factor-like protein DPB 186 311 - -
Eupl05g01660 351 PIRSF Txn_factor_DP 1 351 IPR015648 GO:0005667|GO:0051726
Eupl05g01660 351 Pfam E2F/DP family winged-helix DNA-binding domain 100 180 IPR003316 GO:0005667|GO:0006355
Eupl05g01660 351 FunFam Transcription factor-like protein DPB 92 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01660 Eupl-Chr5 40797758 40814243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01660 82 298 E2F-DP Transcription Factor Family AT5G02470 54.128 1.18e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl05g01660 DP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01660 K04683 - nnu:104586327 602.823