Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01653 ATGGCACCGATGAAGGAATCGTTGGAGGTGGCGGATCAGCTGTTCGAGGTTGTGAGGGAGATATCTGGGTTTCCCGAGTGTCGGAATACGTCGAAGAAGCTGTACTGTAATCTCGTGAGGAGGGTGAAGCTCTTGAGCCCCCTTTTTGAGGAATTGAAGGACAGCGAGGGGGTTCTCGGTGAAGAAGAGGTTCGAGCTCTGGTATCATTGAGGGATGCCTTGGATCCGGCTAAAGAGCTTCTTCGATCGGTCCACGAAAGGAGTAAGCTCTATCAGGCTCTACAAAGGGACAAAATTGCAAAAACATTTCATGAAGTCACGGAAAAAATTGAGAAAGCATTGAGCGAAATTTCCTATGATAAACTTGATATATCAGAAGAAGTTCAAGAACAGATTGAACTCGTGCATGCGCAGTTTAGAAGGGCAAAAGAAAGAATGGACTCCCCTGATTTACAACTGTACATGGATTTGTCCACAGCACTGAAAGAAAAGGAACCAGACCCATCCATCTTAATAAGACTTTCAGAAAAGCTGCAACTCAGGACCATCAATGATCTCAAGAAAGAGTCTTTGGCTCTGCATGCAATGTTTATCTCCTGCGGTGGAGATCCGGGGGACTGCCTCGAGGAGATGTCAACCTTGCTTAAGAAGCTAAAAGATTCTGTACTAACTGAAAACCCAGATGCAGACATCTCCGAAAGCGAAAAAATCTTTGTAAAACACAGATCTCCTGTCATCCCAGATGATTTCCGGTGCCCGATATCTCTTGAATTGATGAAAGATCCTGTCATTGTCTCCACTGGACAGACTTACGAGCAGTCTTGCATACAGAAATGGATGGATGCAGGGCACAGGACCTGTCCGAAGACACAGCAGACTTTGTTGCACACATCCCTCACGCCCAACTACGTTTTGAAGAGTCTAATTGCTCAATGGTGCGAGAGCAACGGTATTGAGCTTCCAAAAAAGCAAGGGAGTTGTCAAAACTGGAGGTCAGGCAGCTGTGTTTCGGACTGTGATCGGGCAACTATTGGTGCCTTATTACAAAAATTATCAAATGGGAACCCGGATGAGCAAAGAGCAGCTGCTGGTGAGCTCCGGTTGCTGGCAAAGAGGAATGGAGATAACCGAGTATGTATTGCAGAAGCAGGAGCCATTCCCCTGCTTGTTGAACTACTATCCTCCCCTGACCCCAGGACACAGGAGCATGCAGTTACAGCGCTTCTCAACCTTTCCATAAATGAGACTAACAAAGGAAGTATAGTTAATGCAGGAGCGATACCGGATATAGTGGATGTGTTAAAAAATGGCAGCATGGAAGCAAGGGAGAATGCAGCTGCCACCCTTTTCAGTTTGTCTGTCATAGATGAGAACAAGGTGGCAATAGGGGGAGCAGGAGCCATCCCCGCTCTTATTGAGCTGCTCTGCCAAGGGAGCCCCAGAGGCAAGAAGGATGCTGCCACTGCGATTTTTAACCTTTCAATCTATCAGGGCAACAAAGTGAGGGCCGTCAGAGCTGGGATTGTGGTGCCACTGATGAGGCTGCTGATGGATGCTGCTGGTGGAATGGTGGATGAGGCACTCGCGATACTGGCGATCCTTGCCAGCCATCAAGAAGGGAAGGTGGCAATTGGTCAGGCCGATCCCGTCCCAGTTTTGGTGGAGGTGATGAGGACTGGATCACCACGCAACCGTGAGAATGCTGCAGCTGTGTTGTGGTCACTGTGCACAGGTGATGCGCAGCATCTGAAAACTGCAAAGGAGCTTGGGGCGGAAGAGACACTGAAGGAATTGTCAGAGAACGGAACTGACCGGGCTAAGAGGAAAGCTGGAAATCTTCTTGAACTCCTGCATCGGACAGTTGATGTGATCGTTAACCAATGA 1884 0.483 MAPMKESLEVADQLFEVVREISGFPECRNTSKKLYCNLVRRVKLLSPLFEELKDSEGVLGEEEVRALVSLRDALDPAKELLRSVHERSKLYQALQRDKIAKTFHEVTEKIEKALSEISYDKLDISEEVQEQIELVHAQFRRAKERMDSPDLQLYMDLSTALKEKEPDPSILIRLSEKLQLRTINDLKKESLALHAMFISCGGDPGDCLEEMSTLLKKLKDSVLTENPDADISESEKIFVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYEQSCIQKWMDAGHRTCPKTQQTLLHTSLTPNYVLKSLIAQWCESNGIELPKKQGSCQNWRSGSCVSDCDRATIGALLQKLSNGNPDEQRAAAGELRLLAKRNGDNRVCIAEAGAIPLLVELLSSPDPRTQEHAVTALLNLSINETNKGSIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGGAGAIPALIELLCQGSPRGKKDAATAIFNLSIYQGNKVRAVRAGIVVPLMRLLMDAAGGMVDEALAILAILASHQEGKVAIGQADPVPVLVEVMRTGSPRNRENAAAVLWSLCTGDAQHLKTAKELGAEETLKELSENGTDRAKRKAGNLLELLHRTVDVIVNQ* 628
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01653 627 Gene3D - 332 626 IPR011989 -
Eupl05g01653 627 FunFam RING-type E3 ubiquitin transferase 343 460 - -
Eupl05g01653 627 CDD RING-Ubox_PUB 247 299 IPR045210 -
Eupl05g01653 627 Coils Coil 125 145 - -
Eupl05g01653 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Eupl05g01653 627 SMART arm_5 496 536 IPR000225 GO:0005515
Eupl05g01653 627 SMART arm_5 537 577 IPR000225 GO:0005515
Eupl05g01653 627 SMART arm_5 373 413 IPR000225 GO:0005515
Eupl05g01653 627 SMART arm_5 455 495 IPR000225 GO:0005515
Eupl05g01653 627 SMART arm_5 414 454 IPR000225 GO:0005515
Eupl05g01653 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Eupl05g01653 627 SUPERFAMILY ARM repeat 343 617 IPR016024 -
Eupl05g01653 627 FunFam RING-type E3 ubiquitin transferase 246 319 - -
Eupl05g01653 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Eupl05g01653 627 CDD MLKL_NTD 8 140 - -
Eupl05g01653 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Eupl05g01653 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Eupl05g01653 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Eupl05g01653 627 Pfam Armadillo/beta-catenin-like repeat 375 412 IPR000225 GO:0005515
Eupl05g01653 627 FunFam RING-type E3 ubiquitin transferase 461 623 - -
Eupl05g01653 627 SUPERFAMILY RING/U-box 246 321 - -
Eupl05g01653 627 PANTHER U BOX DOMAIN-CONTAINING 32 617 - -
Eupl05g01653 627 FunFam RING-type E3 ubiquitin transferase 7 120 - -
Eupl05g01653 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Eupl05g01653 627 Gene3D - 4 120 IPR036537 GO:0007166
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl05g01653 Eupl-Chr5 40708855 40714157 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01653 9 626 U-box Gene Family AT3G54850 66.236 0.0 801
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01653 - - ming:122072754 992.26