Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01626 ATGTTGGAAAATGGGCAAGGAGATTGCAAATCTGGGACCATGACAAATGCATCGGGAGACACTTCTTTCACCTCAAGTGAGAAAGCCGACAGATTGACATATAAGCTTGTTCGGGTTGAAGGAGATGGATCTTTTGTTCCTACTTCGGAAGATGAAGTCATAGAGGTTGAGCATTTATTAGCGGATCCAAAATGTGAGAATGGTTTAGTGGATGGTGTTTTATGTTTTGACGCGGAGAATCCAGAGAAGTCCATAGCAATTGAAGATTTTCCATGCCTTGTTGACTATGGTCAAATAAAAACTGAAAGTGGGACATTGGATTCCAATACCAGAGAGGGGAGGGAGGAAGCAAAATTTGAATTTCTTGATGGAATGTTGCAAGGAGTTGATGAGGGGGATCTTCATGTAGCAAATGGGTTGTCTAGTGCATGTGATGATTATCTTTTGGATACTGAATTTTCTGAAGAAGTTCCTGATCTAGATTATGGTCCATTCGAAGGATCCCATCTAGTAAACCATGGTTTGGAAAGTCACTCCTCAGGCTTGATTGAGAGGGACAGAGGTGCTGTTGAGATCTCAAAATTGCCAACATCTGCTATGCCAGTGCCTGAATCTACATCTGATCAGAATGCTTCTTTACTTGACAAGATGACCATTCGTGAATTACAGGAGGCCTTTAGGAGCACATTTGGACGTGAGACATCTGTTAAGGACAAGCAGTGGCTTAAGCGCCGTATCTCGTTTGGTTTACAGAACCTTGTTGAGTTGGAGAATGTTTCGAGCTTCTTGGAAAGTGGAATATCTTCTAATGAGAATGAAGGTGACATGATCTTCACATCTAGTAATGATTCTCCTGGAAGAATGTACCACTCTTTCACAACTGTACTGGGTAACAGGACTAAACCAGTAGGCCGAGGTCTGGAAAGCGACAGTCTTGCTGGCACGGATGCTTGGACAACCAGTTTTCCGGAGGCTGGCAATGTTGGATATGGACTCTTGAATTTGGAAGATAGAGAAAGTATGCTTGCACAGAAGCGATTGCGCAAGCCTACTCGTAGGTACATCGAAGAATCATCAGATCTGAAATCAAGATATTGTAGTGGAAGATTAGATACTCCCATCACAAGTTCAAGGGATAAGCTCAGGCGGGTTAGATCTCACAATCAGCATCATACAAAAGGATTTGGAGCAATGCCACTGGTCTGTAGACAGGATCCGCTTGGGGGATCTGGTATTCAGGTACCATTTGGTCTTCGTGTACGGAAGGGGCGTCCGAAGAAAGATGCATCCATTTTGGGACATGATTCTGAGGATAACAAGGATGACATGTTACTCTCAGTTCCCAGTAGGAATTCGGATTTTGAACCTTCTCCTGTTGAGTCACAAGATGACATGTCTGATGACTGTGTCACAACAACTAGAACTGAAAAGAGTGGGATTCGGAGGAAGCATCATAGGCTGTGGACTCTTTCTGAAGTGATGAAATTGATTGATGGTGTTTCTCAATATGGCGTTGGACGATGGACTGAAATCAAGAGGCTCTTGTTCTCATCATCTGCTTATCGCACGTCTGTTGATCTCAAGGACAAATGGAGAAATCTTCTGAGGGCTAGTACACAGTTGCAGAGCAAGAGAGAGGTTGATCAAGGACGGAAGCACACATCACGTCCTATACCACAGTCTGTTCTACGGCGTGTAAGTGAGTTGGCCATCATCTACCCATATCCTAGGGAGCGCAAGTCCAAGCTCACACGCGCTGCTCCCATTGCCACCCCCATCTATGCCAGCCCCAGTAGTGACACCTCTGTCAGCCGCAGTGGAAGGATCATACACAGGAAGAATTTCACTTGA 1851 0.4457 MLENGQGDCKSGTMTNASGDTSFTSSEKADRLTYKLVRVEGDGSFVPTSEDEVIEVEHLLADPKCENGLVDGVLCFDAENPEKSIAIEDFPCLVDYGQIKTESGTLDSNTREGREEAKFEFLDGMLQGVDEGDLHVANGLSSACDDYLLDTEFSEEVPDLDYGPFEGSHLVNHGLESHSSGLIERDRGAVEISKLPTSAMPVPESTSDQNASLLDKMTIRELQEAFRSTFGRETSVKDKQWLKRRISFGLQNLVELENVSSFLESGISSNENEGDMIFTSSNDSPGRMYHSFTTVLGNRTKPVGRGLESDSLAGTDAWTTSFPEAGNVGYGLLNLEDRESMLAQKRLRKPTRRYIEESSDLKSRYCSGRLDTPITSSRDKLRRVRSHNQHHTKGFGAMPLVCRQDPLGGSGIQVPFGLRVRKGRPKKDASILGHDSEDNKDDMLLSVPSRNSDFEPSPVESQDDMSDDCVTTTRTEKSGIRRKHHRLWTLSEVMKLIDGVSQYGVGRWTEIKRLLFSSSAYRTSVDLKDKWRNLLRASTQLQSKREVDQGRKHTSRPIPQSVLRRVSELAIIYPYPRERKSKLTRAAPIATPIYASPSSDTSVSRSGRIIHRKNFT* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01626 616 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 21 603 - -
Eupl05g01626 616 SUPERFAMILY Homeodomain-like 482 537 IPR009057 -
Eupl05g01626 616 Pfam Myb-like DNA-binding domain 488 535 IPR001005 -
Eupl05g01626 616 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 480 539 IPR017930 -
Eupl05g01626 616 Gene3D - 474 584 - -
Eupl05g01626 616 MobiDBLite consensus disorder prediction 1 24 - -
Eupl05g01626 616 MobiDBLite consensus disorder prediction 425 444 - -
Eupl05g01626 616 MobiDBLite consensus disorder prediction 425 476 - -
Eupl05g01626 616 MobiDBLite consensus disorder prediction 450 466 - -
Eupl05g01626 616 ProSiteProfiles Myb-like domain profile. 488 535 IPR001005 -
Eupl05g01626 616 MobiDBLite consensus disorder prediction 8 24 - -
Eupl05g01626 616 SMART sant 484 537 IPR001005 -
Eupl05g01626 616 CDD SANT_TRF 488 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01626 Eupl-Chr5 40203641 40235812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01626 486 535 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 6.08e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl05g01626 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01626 - - nnu:104601289 749.199