Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01617 ATGGGTGATGTTGAGATACCCATTTGGCTTAAAGGGTTGCCTTTGGCACCCGAATTTCATCCCACCGATACCGAATTTGCAGACCCGATTGCTTATATATCAAAAATTGAGAAAGAAGCGAGTGCTTTTGGCATCTGTAAGGTCATCCCACCGTTGCCCAAACCTTCAAAAAAATATGTTCTTTCTAACTTAAATAAGTCACTCTCGAACTGCCCCGAATTAGGCTCTGATGTGAATTCTACGGAGATCTGTTCGTCTTCTCAAATGGGTTCTGGGGATAAAGGAGATGATGGGGAGGTTAGGGCTGTGTTTACAACGAGGCACCAAGAATTGGGTCATAGTTCGAAAAAAACTAAAGGGCCGGTTCCAGTTCAGCAAACGGCAGTCCATAAGCAAGTTTGGCAGAGTGGGGAAGCGTACACATTGGAACAGTTTGAGACTAAGTCAAAGGCTTTTGCTCGGAGTCATTTGGGTAAGGTTAAGGAGGTTACTCCACTTGTTGTAGAGGCATTGTTCTGGAAGGCAGCTTCTGAGAAGCCCATATACATAGAGTATGCAAACGATGTGCCTGGGTCTGGATTTGGCGAACCGGAGGACCCATATTGGTATTTCCACAAGCGGAGGAGGAAGAGGCAATTCTCTCAGAAGCGTCGAGGAAGCCCTAATTGTGAGAAACACAAAATGGACACTGTATGGAACTCCCACAATGACACAAAGAAAGATGTATCCGTGAAGAATGATTCAGATCCTTCTTTCAAGATCTGTAAGCCGTCTCCTAGTTCATCAATGTCATCATACGAAGGTTCAAGGTTTTGGCAGCAAAAGAGTTTGAGTGCTGGTAGCGATAGGGAAGGTACAGCAGGTTGGAAGCTCTCAAACAGTCCTTGGAATTTACAAGTTATTGCACGCTCCCATGGCTCACTTACGCGTTTTATGCCGGATGAAGTCCCAGGTGTCACAACTCCCATGATTTATATTGGCATGTTGTTCAGCTGGTTTGCCTGGCATGTGGAAGATCATGAGCTTCACAGCATGAATTTTCTCCATACTGGATCCCCAAAGACTTGGTATGCAGTCCCAGGAGATTATGCCTTTGCTTTTGAGGAAGTCATTCGTTGCCAGGGTTATGGAGGAAATCTTGACCGCTTAGCTGCTCTTACACTCTTGGGTGAGAAGACAACTCTATTGTCACCTGAGGCAATTGTCGCATCGGGGATTCCTTGTTGCAGGTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCCAGGGCTTATCACGTAGGATTCAGTCATGGATTTAATTGTGGAGAAGCTGCTAACTTTGGAACTCCCCAGTGGCTCAAGGTAGCCAAGGAAGCTGCCGTGCGTAGGGCCGCAATGAATTATCTTCCCATGCTCTCACATCAACAGCTGCTATACATGCTGACAATGTCATTCGTTTCAAGAGTACCTAGAGCCTTACTACCAGGGGCACGGAGTTCCCGTCTGAGAGATCGCCAGAAGGAAGAAAGAGAACTACTAGTAAAGAAAGCATTTATTGATGATATGTTGAATGAAAACAATCTATTGTCAGTTATCCTTGAAAAACAATCAACTTTTTATGCTGTAATATGGGACCCTGAGTCACTGCCTTCATCAAGTAAAGATTCCCAGTCATTTCCTTCGTCCACCACTCTAGATGCCTCCCGCTTGTTTTATGAGAGTGGTGCAGAAATCTGTAACCCTGAAAAGAAAATATCTTGTGAAGAGAATGTGCACACCGAGGCTTCTAATGTTCCTACCAAGTCAAGTGGAAAAATCTCTTCTGTTGATTCCCTGGATGACAGAAGACCCAATAACCAGGTTGATCAGACAAGGTTATACATGGAAATGGCGGAGGACTTGTATTTGGACGATGATGACTTGCCATGTGGTTTACATGTTGATTCTGGAACATTGGCATGTGTGGCTTGTGGTATTCTCGGTTTTCCATTTATGTCCATTTTACAACCTTCTGAGAGAGCATCGAAGGAACTCTTTCCTGCAGATTGTCAAGTGTTTGAAGAAGGGGGGTCTGTGAAACCTCCTGATTCTTCAAACCTGGATGACACTGTCAAGAAGTCCGCTTCAGATGCACAAGATGGTCGAGATGAGAATCGAAAGGGGAAAGTATCTTCAAAATACAATGGGCATATCCCCATGACTAAAGCCCCAAATTGCGGGAGGGATATCAGGTTGATGGGAAATGATCTTGAGAAATCCTTCTCTAATGCTACCAGTTCATCCTCAGAAGCAACTGACAATATGGAGCTAAAGGAGACTACCTCACTTCATCATCCGATCAAGGCTTCTTCAAGTGCTGAATTGAACCATTCCATGATATTTCCTGCAGATGCTCGCCCCCCTTCCGAACTTTCTCAAGTTTCCAAGGGTCTGCCGGTACCTCTCACAAGTAAGGTTGACAAACAGTGGAACACATCTAATGGATTTCTAAGACCACGGGCCTTCTGCTTGGAGCATGCCCTTGAGATTGAGGAGCTGTTGCAGTCGAAGGGTGGTGCAAACGTGGTCGTTATATGCCATTCAGACTATCCAAAAATAAAGGCCCATGCTGTGGCCGTTGCAGAAGAAATTGGTGCTCCTTTAAATTGTAAAGAGGTTCCCTTAGAGTGCGCATCCCAAGAAGATCTTGATTTGATTAATGTTTCAATCGATGATGAAGAACATGAAGAGTGCGGAGAAGACTGGACCTCAAGACTGGGTCTCAACCTACGGTACTGTGTCAAGCTCAGAAAGCTATCTCCAATGAAGCAAGAACAACATGCTTTGGCCCTGGGCGGGTTGTTTTCTGACATGAATCCTGGTTCAGATGTCTCGAGCCTCAAGTGGAACTCCAGAAGATCTCGCACGCCTCACAAGGCAACTGGTCCAAGTCAATCCAAATTGTGTGAGAAAGCACAAATCAAGGAAGATGATATGCTAGTGGAAAAATTGGAGAGAAGCAAGGTCGTCAGAGAAAATATAGTTATTCAATATTCGAGAAGAAGCTGCAATAGTGAAGTGGGTGCTCCATCTCAAGTAAGTAGGACACGAGGCCGTCCTAGAAAGAACCCACCCAAAGAAGTCTTTACAGCTAATGGAATCCTGGACAATAACAGAATAATATCTGAAGATACCCTTTGTAGCAGTGAGAACACTGGAAATGATTCTGTAGAGTTGGCTAAGTTTACTACTGTGGAAAACTCTGAAAGTCGGCGTGAGGTCTGGACCACTGAAGAAACAAGGGAGATGAGCGGGGTTTCTGATCAAATAAAGTCTGCATGTTCTCCTGCCATTGAGAACACAGGAAATGATTCTTTGGAGTTTGCTAGTTTTCCTATTGTGGAGGACTCTGGAATGCAGGACGAGGATGAGGTGCGGACCACTGAAGAAACCCGGGAGACAAGTGAGGTTTCTGATTCTGTAAAGTCTGCAGGTTTGCTTGCCATTGAGCACACAGATAATGATTCTGTCAAGTTGGCAGAATTTCCTACAATGGAGAATTCTGAAATGCAGCATAAGGTCTGGATGACTGAGGAAACCAAGAACGAGATTTCTAATCATGCAAAATCTGCAGCTTGGTCTGCCATTGAGATCACGGGGAATGATTCTGTGGAGTTGACTAATTTTCCTGTTGTGGAGAACTCTGAAATACAGCATGAGGTCCAGAGCAACGAGGAAACAAGGGAAATTGGCGAGGCTTCTGATCCTGCAAAGTCTGCAGATTTGCTTGACATTGCTATCCCCGTGGTTGGAACTTTTGAAGCACAGAGAGAGAACCAAACGGTGGGGGAAACTAACATGACGGACAAAGCTTGTACTTTCATGGCAGTGGATGGTTTTGAAATGCGGCATGAGATGGGGACTGCCAATGAAACCAGTGAAATGAGCAAGGTTTCTGATCCTGCAAAGTCTCCAGGTTCAACTGCCATTGCTATCTCAACCATTGGAAGCTTTGAAGCACAGATAGAAAACAGAATGTTGGAGGAAGCCAACACAGAGGATGAGGCTTTTAATACTGTGATGTTTAGTTGTGAAATGCAGCAAGAGATGCAGAATGCAAATGGACCAAATGAGGAAGCTGAGGTCTGTAATTATGTTAACTCGATGGGTCAGCCCACAATGGTAGAAAGTTCTGCAGTGCTACAAGAGATCCAAGCTACAGAGGAAGCAAACATGGATGGTGAGTTTTGTTCTGCACAGGATAGTATGGAGTTGGAAAATGCTTACGTCAACATTGTTGATTCTAAGCCCATAAAAAGAGAGGGAAATAAAAGGAAAAGAGAACTGGAACAACTAACAGAAGGTCAAATCAGTTATAATGGTTATATCAGGAGCCCTTGTGAAGGGTTGCGACCAAGGACCTATAGAGTTTCAGCTGGTGGGACTGGGACTGGGACTGGGACTGGGACAGGGACAGGGACGGATGGTAGTAGAACAATGGAGGTGGTGAAAAAGAAGGTGAAGAGAGCACCAAATAATTCAGTTACTTGTAAGGAAAAGAAAGAGAATGTGAAGGGGGCCCATGGCTGTGACCTTGATGGCTGTCGAATGAGTTTCAAGACAAGGACTGAGCTGCTCATGCACAAGCGCAACCGATGCACGCATGAGGGGTGCGGAAAGCGGTTCAGCTCCCACAAGTACGCTATGCTTCATCAGCGTGTTCATGCTGAGGAGAGGCCCCTCAAGTGCCCATGGAAGGGCTGCAAGATGTCATTCAAGTGGGCATGGGCGAGGACTGAACACCTAAGGGTGCACACGGGTGAACGACCATATCAGTGTAAGGTTGCAGGATGTGGCCTGACATTCAGGTTTGTGTCGGATTTCAGCCGGCACAGACGGAAAACTGGGCATTATGTGAACTTACCCATGTAA 4896 0.4532 MGDVEIPIWLKGLPLAPEFHPTDTEFADPIAYISKIEKEASAFGICKVIPPLPKPSKKYVLSNLNKSLSNCPELGSDVNSTEICSSSQMGSGDKGDDGEVRAVFTTRHQELGHSSKKTKGPVPVQQTAVHKQVWQSGEAYTLEQFETKSKAFARSHLGKVKEVTPLVVEALFWKAASEKPIYIEYANDVPGSGFGEPEDPYWYFHKRRRKRQFSQKRRGSPNCEKHKMDTVWNSHNDTKKDVSVKNDSDPSFKICKPSPSSSMSSYEGSRFWQQKSLSAGSDREGTAGWKLSNSPWNLQVIARSHGSLTRFMPDEVPGVTTPMIYIGMLFSWFAWHVEDHELHSMNFLHTGSPKTWYAVPGDYAFAFEEVIRCQGYGGNLDRLAALTLLGEKTTLLSPEAIVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAVRRAAMNYLPMLSHQQLLYMLTMSFVSRVPRALLPGARSSRLRDRQKEERELLVKKAFIDDMLNENNLLSVILEKQSTFYAVIWDPESLPSSSKDSQSFPSSTTLDASRLFYESGAEICNPEKKISCEENVHTEASNVPTKSSGKISSVDSLDDRRPNNQVDQTRLYMEMAEDLYLDDDDLPCGLHVDSGTLACVACGILGFPFMSILQPSERASKELFPADCQVFEEGGSVKPPDSSNLDDTVKKSASDAQDGRDENRKGKVSSKYNGHIPMTKAPNCGRDIRLMGNDLEKSFSNATSSSSEATDNMELKETTSLHHPIKASSSAELNHSMIFPADARPPSELSQVSKGLPVPLTSKVDKQWNTSNGFLRPRAFCLEHALEIEELLQSKGGANVVVICHSDYPKIKAHAVAVAEEIGAPLNCKEVPLECASQEDLDLINVSIDDEEHEECGEDWTSRLGLNLRYCVKLRKLSPMKQEQHALALGGLFSDMNPGSDVSSLKWNSRRSRTPHKATGPSQSKLCEKAQIKEDDMLVEKLERSKVVRENIVIQYSRRSCNSEVGAPSQVSRTRGRPRKNPPKEVFTANGILDNNRIISEDTLCSSENTGNDSVELAKFTTVENSESRREVWTTEETREMSGVSDQIKSACSPAIENTGNDSLEFASFPIVEDSGMQDEDEVRTTEETRETSEVSDSVKSAGLLAIEHTDNDSVKLAEFPTMENSEMQHKVWMTEETKNEISNHAKSAAWSAIEITGNDSVELTNFPVVENSEIQHEVQSNEETREIGEASDPAKSADLLDIAIPVVGTFEAQRENQTVGETNMTDKACTFMAVDGFEMRHEMGTANETSEMSKVSDPAKSPGSTAIAISTIGSFEAQIENRMLEEANTEDEAFNTVMFSCEMQQEMQNANGPNEEAEVCNYVNSMGQPTMVESSAVLQEIQATEEANMDGEFCSAQDSMELENAYVNIVDSKPIKREGNKRKRELEQLTEGQISYNGYIRSPCEGLRPRTYRVSAGGTGTGTGTGTGTGTDGSRTMEVVKKKVKRAPNNSVTCKEKKENVKGAHGCDLDGCRMSFKTRTELLMHKRNRCTHEGCGKRFSSHKYAMLHQRVHAEERPLKCPWKGCKMSFKWAWARTEHLRVHTGERPYQCKVAGCGLTFRFVSDFSRHRRKTGHYVNLPM* 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 1014 1035 - -
Eupl05g01617 1631 SMART JmjN_1 15 55 IPR003349 -
Eupl05g01617 1631 ProSitePatterns Zinc finger C2H2 type domain signature. 1571 1593 IPR013087 -
Eupl05g01617 1631 Gene3D Classic Zinc Finger 1537 1623 - -
Eupl05g01617 1631 ProSiteProfiles JmjC domain profile. 290 459 IPR003347 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 953 974 - -
Eupl05g01617 1631 SUPERFAMILY beta-beta-alpha zinc fingers 1579 1621 IPR036236 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 701 719 - -
Eupl05g01617 1631 SMART c2h2final6 1516 1538 IPR013087 -
Eupl05g01617 1631 SMART c2h2final6 1599 1625 IPR013087 -
Eupl05g01617 1631 SMART c2h2final6 1539 1563 IPR013087 -
Eupl05g01617 1631 SMART c2h2final6 1569 1593 IPR013087 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 586 602 - -
Eupl05g01617 1631 SUPERFAMILY Clavaminate synthase-like 290 457 - -
Eupl05g01617 1631 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1568 IPR013087 -
Eupl05g01617 1631 Pfam JmjC domain, hydroxylase 324 442 IPR003347 -
Eupl05g01617 1631 Gene3D Cupin 9 463 - -
Eupl05g01617 1631 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1563 IPR013087 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 1467 1485 - -
Eupl05g01617 1631 FunFam Probable lysine-specific demethylase ELF6 1566 1595 - -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 1465 1486 - -
Eupl05g01617 1631 ProSiteProfiles Zinc finger C2H2 type domain profile. 1599 1630 IPR013087 -
Eupl05g01617 1631 SMART cupin_9 290 459 IPR003347 -
Eupl05g01617 1631 ProSitePatterns Zinc finger C2H2 type domain signature. 1601 1625 IPR013087 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 212 267 - -
Eupl05g01617 1631 ProSiteProfiles Zinc finger C2H2 type domain profile. 1569 1598 IPR013087 -
Eupl05g01617 1631 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Eupl05g01617 1631 Pfam jmjN domain 17 50 IPR003349 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 586 614 - -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 253 267 - -
Eupl05g01617 1631 SUPERFAMILY beta-beta-alpha zinc fingers 1527 1576 IPR036236 -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 682 737 - -
Eupl05g01617 1631 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1564 - -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 1078 1097 - -
Eupl05g01617 1631 MobiDBLite consensus disorder prediction 217 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01617 Eupl-Chr5 40110194 40136613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01617 1 673 C2H2 Transcription Factor Family AT5G04240 61.209 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01617 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01617 - - ming:122057542 1669.06