Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01590 ATGGCTTCGTCTTCTCTCGTCCTCCCATCTCCCTTTACTAAAACCCTAGTTTTCTCCAAAACCCGAAACTCTTTTCTCTCCGTTCTCCCTTCTACACTCTCTCTAGCTTCCTCTCTCAAAACGCAGAACAAACCCATTTCCATTTCTTCTTCATTTTCCTCTGAGAGAAGGTTCAACAGTGTATCGTCTCGTTTCGTCCGAAACATAGCTATTTCGTCCGAATTCGAGCAAGATGAGGAGTTCTTGAGCGAAGGAGACGAAAGGAGTTACTCCCCTGATTTGAAGCTCTTTGTGGGTAACCTTCCCTTCGGCGTCGACAGCGCTGAACTCGCTGGTTTGTTTGAACGAGCCGGAAATGTTGAGATGGTCGAGGTAATTTATGACAAGACGACTGGTAGAAGTCGTGGATTTGGGTTTGTGACCATGTCTACGGCCAAGGAAGTAGAAGCAGCAAAACGGCATTTCGATGGATACGAACTCGAAGGGAGGCAATTGAGGGTGAACTCCGGACCTCCTCCTCCTAAGGAAGATTCATCTTTTAGGGGATCCCGAGGTGAAGGGAGTTTTGGTGGTTCCAACCGAGGAAACCGAGGTGGAGGGAGTTTTGGTGCTTCCAACCGAGTAAACCGGGGTGCAACGAGTTTTGGTGCTTCCAACCGGGGAAACCGAGGTGGGGCGAGTTTTGGTGATTCCAACTGGGGAAACCGAGGTGGAGCGAGTTTTGGTGATTCCAACCGGAGAAACCGAGGTGGAGCGAGTTTTGGTGATTCCAACCGGGGAAACCGAGGTGGAGCGAGTTTTGGTGATTCCAACCGGTTACACGTGAGTAACCTTTCATGGCGTGTTGATGATATAGCACTTCAGACCCTGTTCAACGAGCAAGGAAATGTTATGGAGGCCAAAGTGGTGTACGACAGGGAGAGCGGTAAGTCGAGGGGTTTCGGGTTCGTCACTTACAACTCTGCTGAGGAGGTCGACAATGCAATTTCATCCCTAAATGGAGTTGATTTGAACGGCAGACCAATCCGAGTAACCATGGCGGAAGCGAAACCAAGGCGCCAATTTTGA 1068 0.4972 MASSSLVLPSPFTKTLVFSKTRNSFLSVLPSTLSLASSLKTQNKPISISSSFSSERRFNSVSSRFVRNIAISSEFEQDEEFLSEGDERSYSPDLKLFVGNLPFGVDSAELAGLFERAGNVEMVEVIYDKTTGRSRGFGFVTMSTAKEVEAAKRHFDGYELEGRQLRVNSGPPPPKEDSSFRGSRGEGSFGGSNRGNRGGGSFGASNRVNRGATSFGASNRGNRGGASFGDSNWGNRGGASFGDSNRRNRGGASFGDSNRGNRGGASFGDSNRLHVSNLSWRVDDIALQTLFNEQGNVMEAKVVYDRESGKSRGFGFVTYNSAEEVDNAISSLNGVDLNGRPIRVTMAEAKPRRQF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01590 355 Gene3D - 230 354 IPR012677 -
Eupl05g01590 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Eupl05g01590 355 SUPERFAMILY RNA-binding domain, RBD 89 201 IPR035979 GO:0003676
Eupl05g01590 355 MobiDBLite consensus disorder prediction 162 270 - -
Eupl05g01590 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Eupl05g01590 355 SUPERFAMILY RNA-binding domain, RBD 268 354 IPR035979 GO:0003676
Eupl05g01590 355 PANTHER OS02G0815200 PROTEIN 24 353 - -
Eupl05g01590 355 MobiDBLite consensus disorder prediction 185 270 - -
Eupl05g01590 355 SMART rrm1_1 272 345 IPR000504 GO:0003723
Eupl05g01590 355 SMART rrm1_1 95 168 IPR000504 GO:0003723
Eupl05g01590 355 Gene3D - 51 169 IPR012677 -
Eupl05g01590 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Eupl05g01590 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01590 Eupl-Chr5 39738712 39741769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01590 96 354 Eukaryotic Initiation Factors Gene Family AT1G22760 29.617 2.04e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01590 - - rvl:131324749 335.109