LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g01588	ATGGCAGCAGTGTTGCAGTTCTTCCCGTCGTCGACGAGCTTGTCTGCGAAGGTTCACCCCGTTGTCATCTTCAATATCTGTGATTGCTACGTTAGGCGCCCAGATCAAGCAGAAAGAGTGATTGGTACTCTTCTCGGTTCGATCTCCCCTGATGGCACTGTCGATATTCGGAACTCGTATGCGGTTCCTCACAACGAGTCTTCCGATCAGGTTGCGTTGGATATTGATTACCATCATAACATGTTGCTGTCTCACCAAAAGGTGAATCCAAAGGAAGTCATCGTCGGATGGTATTCAACAGGCTTTGGGGTCTCAGGGGGGAGTGCATTGATCCATGAATTCTATTCAAGAGAAGTACAAAACCCTGTTCATTTGACTGTTGATACCGGATTCAGGGATGGAGAAGCTACCATCAAAGCTTTTGTTACTGTCAACTTGTCTCTTGGAGATCGGCAGCTTGCTGCACAATTTCAAGAAATTCCTCTGGATCTGCGGATGATTGAAGCAGAGCGAGTTGGATTTGATATTCTAAAGACGACAATGGTAGATAAGCTCCCTAATGATTTGGAAGGAATGGAAGCCTCTATGGAGAGGCTGCTTGCTCTCATTGACAATGTCTACAAATATGTTGATAATGTTGTGGAACGACGTGTTGCTCCAGACAATAAAATTGGAAGGTTCATATCAGATACTGTAGCTTCCGTTCCGAAAATGTCACCTGCAGCTTTTGATAAGCTCATAAATGACAACCTTCAGGACCATTTACTACTACTATATTTGTCGAGCCTCACAAGGACGCAGCTCGGCTTAGCAGAAAAGTTGAATACAGCTGCTCAGATTCTATAA	846	0.4456	MAAVLQFFPSSTSLSAKVHPVVIFNICDCYVRRPDQAERVIGTLLGSISPDGTVDIRNSYAVPHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGFGVSGGSALIHEFYSREVQNPVHLTVDTGFRDGEATIKAFVTVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKTTMVDKLPNDLEGMEASMERLLALIDNVYKYVDNVVERRVAPDNKIGRFISDTVASVPKMSPAAFDKLINDNLQDHLLLLYLSSLTRTQLGLAEKLNTAAQIL*	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g01588	281	FunFam	Eukaryotic translation initiation factor 3 subunit F	5	182	-	-
	Eupl05g01588	281	ProSiteProfiles	MPN domain profile.	16	147	IPR037518	-
	Eupl05g01588	281	Gene3D	Cytidine Deaminase, domain 2	7	182	-	-
	Eupl05g01588	281	SMART	pad1_6	15	146	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Eupl05g01588	281	CDD	MPN_eIF3f	17	274	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Eupl05g01588	281	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	14	277	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Eupl05g01588	281	Pfam	Maintenance of mitochondrial structure and function	168	274	IPR024969	-
	Eupl05g01588	281	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	10	278	-	-
	Eupl05g01588	281	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	14	120	IPR000555	GO:0005515\|GO:0008233\|GO:0008237

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g01588	Eupl-Chr5	39716072	39727032	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g01588	4	281	Eukaryotic Initiation Factors Gene Family	AT2G39990	76.140	4.74e-154	430

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g01588	K03249		-	nnu:104610487	498.819