LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g01578	ATGATCGGGTCGGGCTTCATCGATGAATTAGACGCGGATATCTGCGGGGATTTCTTTGACCAAATTGACGATTTGCTTAACTTCCCAAGCGAAGACATCCAAGAGGGATTTGTTGGAGGAAAATATGACGGCTTCCAAGGTGTTTGGCCTGCCCCACCTGATTCTTTCCCTGGTTCTGCCTCTTTTTTCTCCGGCAACTGCACCAACAGCAGTTCAGAACTTCCCACGGAGTTCGCTGTTCCGTATGAAGAGATTGCCCAGCTGGAATGGCTTTCAAACTTCTTCGAGGACTCCTCTCCCGGAAGCATCCCCCTCGACAAAGACTCCTCCTTCTCCGCCGGAAGTATCCCCCTCGATAAAGACTCCTCCTCCTCCTCCTCATCCTCCTCCATTAACAACAAGAAGAAGAACACCTATCCGTTCCAGACCTCCAGCTCCGTATCTGTCCTGGAAAGCAGCAGTAGCAGTAGTAGCAGCAGCAGCTCCTGCTCTGAAGGAAAGATGACGCCGCTTAATCCTGAAACTCTTATTCGAGGCCGCGCTCGGAGCAAGCGCCCGCGTCCCGCAACCTTCAACCCTCGTCCCATGATCTCACTCATCTCCCCCACTTCCTCCATAACCGACCTCACCTCCGAATTACCCTCAGAATTGGAGAATTTTGCGGAGTCCCATCCCGCAACAAAAATACCGAAACCCGCTGCCACAGAAAACAAGAAAAAAAAGAAAAAGAAGTTGTTACCTCCGTCAGGTGCGACGGAGCAATGGGTTTCGCCACAGCCTATCGCGGTTAGGAAATGTTTGCATTGTGAGATAACGAAGACTCCGCAGTGGAGAGCGGGTCCTATGGGGCCCAAGACCCTATGCAACGCATGTGGGGTTCGCTACAAGTCGGGTCGGCTCTATCCAGAATACCGGCCCGCAGCAAGCCCAACGTTTGTTGCATCGTTGCACTCCAATTCCCACAAGAAGGTTTTAGAGATGAGGATCAAGGATGACGAGAAGATGACTACAGCTGCAACTGTGACGACGCCACCACCAGACTTCATGCCCAATAGCAGTCATTTGCTTGATTACATTTCAGGATGGGAGAGAGAAAGTTCCTAG	1104	0.5154	MIGSGFIDELDADICGDFFDQIDDLLNFPSEDIQEGFVGGKYDGFQGVWPAPPDSFPGSASFFSGNCTNSSSELPTEFAVPYEEIAQLEWLSNFFEDSSPGSIPLDKDSSFSAGSIPLDKDSSSSSSSSSINNKKKNTYPFQTSSSVSVLESSSSSSSSSSSCSEGKMTPLNPETLIRGRARSKRPRPATFNPRPMISLISPTSSITDLTSELPSELENFAESHPATKIPKPAATENKKKKKKKLLPPSGATEQWVSPQPIAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLYPEYRPAASPTFVASLHSNSHKKVLEMRIKDDEKMTTAATVTTPPPDFMPNSSHLLDYISGWERESS*	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g01578	367	ProSiteProfiles	GATA-type zinc finger domain profile.	260	296	IPR000679	GO:0006355\|GO:0043565
	Eupl05g01578	367	PANTHER	GATA TRANSCRIPTION FACTOR	21	338	-	-
	Eupl05g01578	367	FunFam	GATA transcription factor	257	341	-	-
	Eupl05g01578	367	SMART	GATA_3	260	310	IPR000679	GO:0006355\|GO:0043565
	Eupl05g01578	367	Gene3D	-	262	310	IPR013088	GO:0006355\|GO:0008270
	Eupl05g01578	367	ProSitePatterns	GATA-type zinc finger domain.	266	291	IPR000679	GO:0006355\|GO:0043565
	Eupl05g01578	367	Pfam	GATA zinc finger	266	299	IPR000679	GO:0006355\|GO:0043565
	Eupl05g01578	367	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	264	323	-	-
	Eupl05g01578	367	MobiDBLite	consensus disorder prediction	105	137	-	-
	Eupl05g01578	367	CDD	ZnF_GATA	265	312	IPR000679	GO:0006355\|GO:0043565
	Eupl05g01578	367	MobiDBLite	consensus disorder prediction	151	169	-	-
	Eupl05g01578	367	MobiDBLite	consensus disorder prediction	221	253	-	-
	Eupl05g01578	367	MobiDBLite	consensus disorder prediction	151	199	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g01578	Eupl-Chr5	39581473	39587256	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g01578	8	335	C2C2-Gata Transcription Factor Family	AT1G08010	36.474	5.16e-47	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Eupl05g01578		GATA	2.4e-14	CL0167