Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01577 ATGATCACATTTACGGACTCAGCTAAAGAAACAATGAAGGAGACGGAGAAATGCTTGGATTCTCAACTCTGGCATGCCTGCGCAGGAGGGATGGTGCAGATGCCACTGGTGAACTCAAAGGTTTTCTACTTCCCGCAAGGCCAAGCGGAGCACGCACATGGAAACGTGGATTTCGGAAATTCCCCAAGGATTCCTGCGTCAATCCTCTGCAGAGTTGCTTCCGTGAAATTTATGGCGGATCCTGAGACCGACGAGGTTTATGCAAAGGTCAGGTTGATTCCTCTGAGGAACAATGAGCCTGACTACGATGATGATGGGGTTCTTGGAAGCAACGGATCTGAGGTTCCAGAGAAACCTGCGTCTTTCGCAAAGACGTTGACGCAGTCTGATGCCAACAATGGTGGAGGCTTCTCTGTTCCTCGTTACTGTGCGGAAACAATCTTTCCCCGCTTGGACTATTCAGCAGATCCTCCCGTCCAAACTGTCCTTGCAAAGGATGTTCATGGTGAGATTTGGAAATTCCGGCATATTTATAGAGGGACCCCACGCCGTCATCTCCTAACAACGGGATGGAGCACTTTCGTGAACCAGAAGAAGCTCGTTGCTGGGGACTCAATTGTGTTCTTGAGAACAGAAAATGATGATCTCTGTGTTGGAATTCGACGAGCGAAGAGAGGGATTGGTGGTGGGCCAGAGTCCCCATCTGGGTGGAATCCAGCTGCTGGAAACTGTGCCTCACCATATGGGGGATTTTCTGTCTTCTTGAGGGAGGACGAGAACAAGCTAATGAGAAATGCTAATGGTGGGAATTCAAACTCCGGTGGGGCTTCGAGGGGGAAAGGAAGAGTGAGAGCCGAATCTGTTATTGAAGCTGCAACTCTAGCTGCCAATGGACAGCCCTTCGAGGTTGTTTATTACCCGCGAGCCAGCACTCCGGAGTTTTGTGTGAAGGCCTCTTCTGTGAAGACAGCAATGCGGATCCAGTGGTACTCAGGGTTGAGGTTCAAGATGGCATTTGAAACTGAGGATTCTTCACGGATAAGCTGGTTCATGGGAACCATATCGTCTGTACAGGTTGCCGATCCTGTGCGTTGGCCGAATTCACCGTGGAGGCTTCTCCAGGTGACATGGGACGAGCCAGACTTGCTACAAAATGTGAAGCGTGTCAGCCCATGGCTGGTCGAAACGGTATCAAACATACCCTCCATCCATCTGTCACCCTTCTCACCGACGAGGAAGAAGATGCGGCTCTCGCAACACCCAGATTTCCCCCTTGATGGCCAACTTCTAATGCCGTCATTTTCAGGCAACACCCTTGGGACCAGCAGCCCCTTGTGTTGTCTATCAGACAACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTCAACAAACTGCAGTCGGGTCTATTTCCAGCCAGTTTCCAGCGGCTTGATCACGCTGCCCCAACATCCAGAATCCCCCATGGCCCCATCATGGGAAATCACAACGGCGATGAGAATGTATCTTGCTCACTAACCATGGGAAATTCCACCCAGAGTTCAAAGAAATCTGATGAAGGAAAGACACCCCTGTTCGTGCTCTTCGGTCAACCAATACACGCCGATCAACAGATCTCTCTTTGCTGCTCTGGTGATACAGTCTCACCAGTTCTTACTGGAAACAGTTCATCGGATGGTAATCCGGAGAAGACAGCAAACTTCTCTGATGGTTCTGGATCTGCGCTTCATCAGAACGGCCCGCCAGAGAATTCATCCAACGAAGGTTTTCCATGGTACAAGGATCGCCGGATGACCGAGCTAGGTTTGGAGACTGGCCACTGCAAAGTTTTCAGGGAATCAGAGGATGTGGGTCGGACTCTTGACCTCTCAGTCCTTGGTTCATACGAAGAGCTATACAGAAGGCTGGCCAACATGTTTGGCATTGAAAGATCAGAGATGTTGAGCCACGTGCTCTACCGGGATGCGACAGGTGCAATTAAACACACTGGAGATGAACCATTCAATGAGTTCATGAAAACAGCAAGGAGGCTGACAATTCTAATGGATTCAGGCAGTGACAACAGAGGAAGGTAG 2106 0.5009 MITFTDSAKETMKETEKCLDSQLWHACAGGMVQMPLVNSKVFYFPQGQAEHAHGNVDFGNSPRIPASILCRVASVKFMADPETDEVYAKVRLIPLRNNEPDYDDDGVLGSNGSEVPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTENDDLCVGIRRAKRGIGGGPESPSGWNPAAGNCASPYGGFSVFLREDENKLMRNANGGNSNSGGASRGKGRVRAESVIEAATLAANGQPFEVVYYPRASTPEFCVKASSVKTAMRIQWYSGLRFKMAFETEDSSRISWFMGTISSVQVADPVRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVETVSNIPSIHLSPFSPTRKKMRLSQHPDFPLDGQLLMPSFSGNTLGTSSPLCCLSDNTPAGIQGARHAQFGISLSDLHLNKLQSGLFPASFQRLDHAAPTSRIPHGPIMGNHNGDENVSCSLTMGNSTQSSKKSDEGKTPLFVLFGQPIHADQQISLCCSGDTVSPVLTGNSSSDGNPEKTANFSDGSGSALHQNGPPENSSNEGFPWYKDRRMTELGLETGHCKVFRESEDVGRTLDLSVLGSYEELYRRLANMFGIERSEMLSHVLYRDATGAIKHTGDEPFNEFMKTARRLTILMDSGSDNRGR* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01577 701 SMART B3_2 122 224 IPR003340 GO:0003677
Eupl05g01577 701 MobiDBLite consensus disorder prediction 563 596 - -
Eupl05g01577 701 CDD B3_DNA 121 222 IPR003340 GO:0003677
Eupl05g01577 701 MobiDBLite consensus disorder prediction 563 601 - -
Eupl05g01577 701 MobiDBLite consensus disorder prediction 501 530 - -
Eupl05g01577 701 Gene3D - 614 698 - -
Eupl05g01577 701 MobiDBLite consensus disorder prediction 508 530 - -
Eupl05g01577 701 FunFam Auxin response factor 329 402 - -
Eupl05g01577 701 Gene3D - 120 224 IPR015300 -
Eupl05g01577 701 FunFam Auxin response factor 120 224 - -
Eupl05g01577 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl05g01577 701 Gene3D - 329 402 - -
Eupl05g01577 701 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Eupl05g01577 701 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Eupl05g01577 701 ProSiteProfiles PB1 domain profile. 615 695 IPR000270 GO:0005515
Eupl05g01577 701 Pfam Auxin response factor 291 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl05g01577 701 SUPERFAMILY DNA-binding pseudobarrel domain 119 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01577 Eupl-Chr5 39563879 39568884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01577 15 698 B3 DNA Binding Superfamily AT4G30080 62.267 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl05g01577 B3 5.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01577 - - nnu:104594869 1222.61