Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01569 ATGGCGATGGCCGTCGCGCCACACAGAGAGAGCAGCAGTGGCAGCATCAACAAGCATCTTGACGCCGGAAAGTATGTCCGGTACACGGCCGAGCAGGTTGAAGCTCTCGAACGAGTTTACGCAGAATGTCCCAAGCCGAGTTCGATGCGTCGGCAGCAACTCATCCGCGAGTGTCCGATACTCTCCAACATCGAACCCAAGCAAATTAAAGTCTGGTTTCAGAATCGCAGGTGCCGTGAGAAGCAGAGGAAAGAAGCTTCTCGACTTCAGACTGTGAACAGAAAGTTGACTGCAATGAACAAGCTGTTGATGGAGGAGAATGATCGCCTCCAGAAACAGGTGTCGCAGCTGGTGTATGAGAACGGGTACATGCGGCAGCAATTGCAAAACGCATCTGCGGCGACTACTGATGCAAGCTGTGAGTCCGTTGTTACCACTCCTCAGCATCCTCTTAGGGATGCAAATAACCCCGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATTGTTGCCATTTCACACAGTTGTAGTGGAGTGGCAGCACGAGCCTGCGGTCTAGTAAGTTTAGAACCTACAAAGATTGCAGAGATCCTGAAAGATCGTCCATCTTGGTTCCGAGATTGTCGGAGCCTTGAAGTCTTCAGCGTGTTCTCAGCTGGAAATGGAGGGACAATTGAACTGTTATACATGCAGATGTATGCTCCAACTACACTGGCTCCTGCACGTGACTTTTGGACTCTGAGATATACTACGAGTTTGGAAGATGGCAGTCTTGTGGTTTGCGAGAAATCAGTGTCTGGTTCTGGTGCTGGCCCAAATGCATCCACTGCTTCCCAATTTGTTCGAGCTGAGATGCTGCCCAGTGGTTATTTGATTCGGCCATGTGAGGGGGGAGGATCAATCATCCACATTGTCGACCACCTGGATCTTGAGGCATGGAGTGTGCCTGAGGTGTTGCGACCGCTTTATCAGTCATCAAAAGTTGTAGCTCAGAAAATGACCATTTCAGCACTGCGCCACATCAGGCAAATAGCTCAGGAGACAAGTGGCGAAGTGGTATATGGTTTGGGTAGGCAGCCTGCTGTATTGCGAACTTTTAGTCAAAGATTGAGCAGGGGATTCAATGATGCGGTTAATGGATTCAATGATGATGGCTGGTCATTGATGAACTGTGATGGGGCTGAAGATGTAATAATTGCTGTTAACTCCACCAAGAACATGGGAACTGTTGCCAATCCTGCTAATCCACTCCCATTGCCCGGAGGTACCCTGTGCGTGAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCATTGCTGGTTCGATTCTTGAGGGAACACCGATCTGAGTGGGCTGATTACAACGTTGATGCCTATTCTGCTGCATCATTAAAAGCTGGCTCATATGCTTTTCCGGGCTTGAGGCCCACCAGGTTCACTGGGAGCCAAATCATCATGCCGCTTGGTCACACAGTGGAGCATGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGTCAAGCTCTCACTCAAGAAGAGGCTGTTTTATCCAGGGATATTCATCTCTTACAGATTTTTAGTGGAGTGGACGAGAATGCTGTGGGGGCCTGCTCTGAACTTGTTTTTGCCCCAATTGACGAAATGTTTCCAGATGATGCTCCCCTGCTACCCTCTGGTTTTCGGATCATACCATTGGATGCAAAAACATGTGAAACACAGGACACATTGACGGCTCATCGGACGTTGGATTTAGCATCCAGCCTAGAAGTGGGCCCAACCACAAACCGGGCTGCTGGAGATGCATCTCAAAATTCCTATAACTCGCGCTCGGTGTTGACCATTGCCTTCCAATTTCCTTTCGAGAACCATCTCCGCGATAGCGTTGCGACAATGGCTCGACAGTATGTTCGCAGTGTGATTTCCTCCGTGCAGAGGGTTGCCATGGCCATAGCTCCATCTGGCCCCGGCCAGCATATTGGGTCGAAGGGTTCTCCAGAAGCTCATACACTTGCTCACTGGATCTGCCAGAGCTATAGTTGCCAGTTAGGGGCAGAACTGCTGAGGTCTGACAGCGAGGGAGGTGACTCCATGTTGAAACTGCTCTGGCACCATCCAGATGCCATATTGTGCTGCTCTTTGAAGTCGCTGCCAGTCTTCACGTTCGCCAACCAAGCTGGCCTTGATATGCTGGAGACCACACTGGTGGCTCTACAGGACATTACATTGGATAAGATATTCGACGAGCCTGGGCAGAAATCATTGTGCACCGACTTGGCCAAGATAATGCAACAGGGTTTTACTTATCTGCCAGCTGGGATTTGTGTTTCAACAATGGGGCGCCACATATCATATGAGCAAGCCGTTGCCTGGAAAGTCCTGGCCGAAGAGAACACCGTCCACTGTATTGCCTTCGCTTTCATCAACTGGTCTTTTGTGTAA 2520 0.5 MAMAVAPHRESSSGSINKHLDAGKYVRYTAEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQNASAATTDASCESVVTTPQHPLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIVAISHSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFSVFSAGNGGTIELLYMQMYAPTTLAPARDFWTLRYTTSLEDGSLVVCEKSVSGSGAGPNASTASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLEAWSVPEVLRPLYQSSKVVAQKMTISALRHIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMNCDGAEDVIIAVNSTKNMGTVANPANPLPLPGGTLCVKASMLLQNVPPALLVRFLREHRSEWADYNVDAYSAASLKAGSYAFPGLRPTRFTGSQIIMPLGHTVEHEELLEVIRLEGQALTQEEAVLSRDIHLLQIFSGVDENAVGACSELVFAPIDEMFPDDAPLLPSGFRIIPLDAKTCETQDTLTAHRTLDLASSLEVGPTTNRAAGDASQNSYNSRSVLTIAFQFPFENHLRDSVATMARQYVRSVISSVQRVAMAIAPSGPGQHIGSKGSPEAHTLAHWICQSYSCQLGAELLRSDSEGGDSMLKLLWHHPDAILCCSLKSLPVFTFANQAGLDMLETTLVALQDITLDKIFDEPGQKSLCTDLAKIMQQGFTYLPAGICVSTMGRHISYEQAVAWKVLAEENTVHCIAFAFINWSFV* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01569 839 SMART START_1 162 372 IPR002913 GO:0008289
Eupl05g01569 839 CDD bZIP 76 115 - -
Eupl05g01569 839 Gene3D - 196 379 IPR023393 -
Eupl05g01569 839 SMART HOX_1 21 87 IPR001356 GO:0003677
Eupl05g01569 839 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Eupl05g01569 839 SUPERFAMILY Bet v1-like 162 374 - -
Eupl05g01569 839 Pfam START domain 163 370 IPR002913 GO:0008289
Eupl05g01569 839 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Eupl05g01569 839 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Eupl05g01569 839 Pfam MEKHLA domain 696 838 IPR013978 -
Eupl05g01569 839 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Eupl05g01569 839 Gene3D - 17 90 - -
Eupl05g01569 839 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Eupl05g01569 839 FunFam homeobox-leucine zipper protein ATHB-15 198 379 - -
Eupl05g01569 839 Coils Coil 93 120 - -
Eupl05g01569 839 CDD homeodomain 24 84 IPR001356 GO:0003677
Eupl05g01569 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 839 IPR044830 GO:0003700
Eupl05g01569 839 CDD START_ArGLABRA2_like 157 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01569 Eupl-Chr5 39427379 39437502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01569 1 839 Homeobox Transcription Factor Family AT5G60690 79.505 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl05g01569 START 2.1e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01569 K09338 - ming:122057760 1520.75