Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01555 ATGGGAACTGAAAAGGAATCTATTTCTGAGGAGCATGGTCAAGGTTCATGCAACATAACAGTTGATCTTCCAAACCAAAAGGCTGAAGATTCATTTGGAATAACTAAAGAAACCCCAACCGTTCAACACTGGAGACGACAGAACCTTTTCCTAAAGATACCCTCAAGAACTTTGGAGGTCTCATCTCAGGATTTTGTGAGAATAAACATGCCCCCAACACCAATCTACACTCCCACAATAGTAAATTTTCCTCTAACTCCCAGCCCTACTTCTGCAAGAATAAATGCATCCCCAGGTCCCTCCTCTTCTAAAGGTAAATCATCCATAAAAGGCCTCTTGCCACGACTAAGCTTCAAGTACCGGAATTCGACTTTAGAGATTGAGAAGGCAGCCATACTAGCAGTAGGAGCGTTGCCGGCAGGGCCACATGAGAAGCCTTCTGTCTCGAGGTCATTTTCTCTTACAAAGATATTTACGCCCAGGATGAAGAGAACATCGTCCCTCCCTGTTACCCCAATTGCACACTCAAACCCGGAATCAGTGCATGGAGGAAGCGGGTTCGATCTGATGAATTCAACTAAAAAAGGGGCCCAGTGGCACATATCTCGTTCACTTTCAGTCCCCATGAACAACAAAATAAGAAGCATAAGACGAACGGATTCTTTAGGGGGTGTATTTCGTGTAATTCCTTCAACTCCACGAGTGATGGAAGGGAGTGGTGCTACTTCGAATGCTACTACAACATTAGATGCTGAGAACAATGCTGCTGATGGTGTAAATATACCTGAAGAACAGGCTGTGTGTAGAATTTGTTTGATCGAACTTGGTGAAGACATTGACACCCTCAAGATGGAATGCAGTTGCAAAGGTGAACTTGCACTGGCCCACCAAGAATGCGCTGTAAAATGGTTCACCATCAAGGGTAACAAGAACTGCGATGTATGTAAGCAGGAAGTTCAGAACCTACCTGTTACCCTTCTACGAATCCAAAACCTTCAAACCCTTAATGCACAAGGAAACAGAGCTCGGCAAACAGCAGTTCAGCAAAACAGGGTTTGGCAGGATGTGCCTGTTCTCATCATTATCAGCATGCTTGCCTACTTTTGTTTTCTCGAACAGCTTCTGGTCACCAAAATGGGTACTGGTGCCATTGCTGTATCACTGCCGTTTTCCTGCATGCTGGGTCTTCTTGCATCAATGACATCATCAACCATGGTGAGGAGAAGATTTGTCTGGGTCTTTGCTTCAATTCAATTTGCACTGGTGGTTCTCTTTGCTCATCTTTTCTATTCATTGCTTCATGTGCAAGTTATTGTATCCATCCTCCTTGCCACGCTTGCTGGATTTGGTGTTGCAATGAGTGGGAATTCAATTCTTGTTGAGTTCTTGAAGTGGAGAAGAAGACAGCGCACTCAGTCAGATCATCTTCATGGTTCCCAAGAAATGTCGCATCCAGATCAATTGCCAGAAGGCGCATATCCACCCCAAACAGACCATCCTGACCACCACGAAACTGAAATTGAAATTTCAGGTACTCTGCGAGTGAGCTGA 1551 0.4468 MGTEKESISEEHGQGSCNITVDLPNQKAEDSFGITKETPTVQHWRRQNLFLKIPSRTLEVSSQDFVRINMPPTPIYTPTIVNFPLTPSPTSARINASPGPSSSKGKSSIKGLLPRLSFKYRNSTLEIEKAAILAVGALPAGPHEKPSVSRSFSLTKIFTPRMKRTSSLPVTPIAHSNPESVHGGSGFDLMNSTKKGAQWHISRSLSVPMNNKIRSIRRTDSLGGVFRVIPSTPRVMEGSGATSNATTTLDAENNAADGVNIPEEQAVCRICLIELGEDIDTLKMECSCKGELALAHQECAVKWFTIKGNKNCDVCKQEVQNLPVTLLRIQNLQTLNAQGNRARQTAVQQNRVWQDVPVLIIISMLAYFCFLEQLLVTKMGTGAIAVSLPFSCMLGLLASMTSSTMVRRRFVWVFASIQFALVVLFAHLFYSLLHVQVIVSILLATLAGFGVAMSGNSILVEFLKWRRRQRTQSDHLHGSQEMSHPDQLPEGAYPPQTDHPDHHETEIEISGTLRVS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01555 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 323 IPR013083 -
Eupl05g01555 516 MobiDBLite consensus disorder prediction 1 21 - -
Eupl05g01555 516 SUPERFAMILY RING/U-box 264 319 - -
Eupl05g01555 516 Pfam RING-variant domain 268 315 IPR011016 GO:0008270
Eupl05g01555 516 ProSiteProfiles Zinc finger RING-CH-type profile. 260 322 IPR011016 GO:0008270
Eupl05g01555 516 PANTHER OS02G0165000 PROTEIN 27 484 - -
Eupl05g01555 516 CDD RING_CH-C4HC3_MARCH 268 316 - -
Eupl05g01555 516 SMART ringv_2 267 316 IPR011016 GO:0008270
Eupl05g01555 516 MobiDBLite consensus disorder prediction 474 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01555 Eupl-Chr5 39239222 39247542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01555 282 375 C3H Transcription Factor Family AT5G59000 29.474 2.27e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01555 - - nnu:104594842 693.73