Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01551 ATGGGAAATATCGCAAGCAGCGGCGGCAGTAGACGGAGGCATAGGGGCCATAACAGCCACCCACCTCCTCCGACTCCGCAACATCCCCAGCCTGAAATTACCGGAAACCGATACGTTTTCGCAGCTGCCACTCCCTACCCGCCTCAGTACCCGAACCCAAATCCACCTCAGTACTATCAGTACTCAGGGTACTACCCGCCTCCGCCACCGTCCATGCCCGTTCCATTGCCTGCTCCGTTTGATCACCACCACCGTGGTGGTGGTCCACATATCGATCCTGCCCATGCAAATTGGGTTGGTGGGCGGTACCCCTGTGGTCCTGTGCCCCTCCCCCCTGCTCCTTATGTTGAGCATCAGAAGGCCATCACGATCCGTAATGATGTTAATCTCAAGAAGGAAACTCTGAGAGTGGAGCCGGATGAAGAGAACCCTGGGCATTTTCTTGTTGCATTTACCTTTGATGCCACCGTTGCGGGAAGCATCACTCTTATCTTCTTTGCAAAAGAAGATGCAGATTGTAACCTGACACCTATGAAAGAGAGCATGCTAGAACCGGTCACAGTATCTTTCCAACAAGGTCTGGGTCAGATGTTCAGGCAACCTTTGGGAACTGGAATTGACTTCTCAATGTTTGAGGAGTCAGAATTACTGAAAGAGGGAGATATGGAAGTGTATCCCCTAGCTGTGAAGGCAGAGGCATCCCCATTGGACAATAATGGGTCAGAGGGGGGAAACCCAATGCCCAGAGCATTAAATTCTCAGATCACACAGGCAGTGTTCGAGAAGGAGAAGGGTGAGTACCAAGTGAGAGTGGCGAAGCAGATCCTCTGGGTGAATGGGATGAGGTATGAGCTACAGGAGATTTATGGTATTGGGAATTCGGTCGACAGTGATTTCGATGGAAATGACCCAGGGAAAGAATGTGTCATCTGCCTATCAGAACCGCGGGACACGACTGTCCTCCCCTGCCGGCACATGTGCATGTGCAGTGGGTGCGCAAAAGTTCTGAGATTCCAGACGAACCGATGCCCCATTTGCCGTCAGCCAGTTGAGCGGCTCCTGGAGATCAAGGTCAACAACAGACCTGATGATTGA 1095 0.5205 MGNIASSGGSRRRHRGHNSHPPPPTPQHPQPEITGNRYVFAAATPYPPQYPNPNPPQYYQYSGYYPPPPPSMPVPLPAPFDHHHRGGGPHIDPAHANWVGGRYPCGPVPLPPAPYVEHQKAITIRNDVNLKKETLRVEPDEENPGHFLVAFTFDATVAGSITLIFFAKEDADCNLTPMKESMLEPVTVSFQQGLGQMFRQPLGTGIDFSMFEESELLKEGDMEVYPLAVKAEASPLDNNGSEGGNPMPRALNSQITQAVFEKEKGEYQVRVAKQILWVNGMRYELQEIYGIGNSVDSDFDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNRPDD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01551 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 357 IPR013083 -
Eupl05g01551 364 MobiDBLite consensus disorder prediction 1 53 - -
Eupl05g01551 364 FunFam probable E3 ubiquitin-protein ligase LOG2 292 357 - -
Eupl05g01551 364 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Eupl05g01551 364 PANTHER MAHOGUNIN 1 359 IPR045194 GO:0061630
Eupl05g01551 364 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Eupl05g01551 364 SMART ring_2 308 346 IPR001841 -
Eupl05g01551 364 SUPERFAMILY RING/U-box 307 353 - -
Eupl05g01551 364 CDD mRING-HC-C3HC5_MGRN1-like 306 347 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01551 Eupl-Chr5 39167404 39175590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01551 101 327 C3H Transcription Factor Family AT3G09770 65.236 5.86e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01551 - - msin:131245988 550.436