Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01550 ATGAAGTGCTTCTCTTTTTCACGCAAGAAAAGCTTCTCTCCAAACTTGGAGGTAGCAATTAGCAAGAACAAAGAAGGTGTAGAAAGTCCTCCGAATGTTCACTTCTTTTCTTACAAGGAATTGAAAGTTGCCACTCAAGGCTTCCGATCATCCAACAAGATTGGTGAAGGTGGTTTTGGGTCTGTATACAAGGGACGACTCCAAGATGGAACTTTTATTGCCGTGAAAGTTCTTTCCGTCCAATCAAGGCAAGGAGACAGAGAGTTTATGGCTGAGATAACTGCCATGTCGAATGTTAGACACGAAAATCTTGTTAAACTGCGTGGTGGATGCAACAGCGGAACTAACCGAATTTTGGTTTACGATTATATGGAAAATAGTAGCCTCGCGCAAACCTTGCTGGGTGGAGAGCACAACAGAAGTAAGTTCAGTTGGAAAGCGCGGCGTGAGATCGCCCTAGGAGTTGCTCGTGCTCTCACCCATCTTCATGAGAATGCTAAACCGCATATTGTACACAGGGATATTAAAGCTAGCAATATACTTCTGGATCGGAATTTTAATCCAAAAGTTTCAGATTTTGGCCTCTCAAAGCTATTTCCCGACAACATTACGCACATTAGTACTCGTGTTGCCGGAACATTAGGGTACCTAGCTCCAGAATATGCAATCACCGGGCATCTAACGCGGAAATCAGATATCTACAGTTTTGGAGTACTGCTTCTGGAAATTCTGAGTGGTCGATGTATTGTCGATTTCGACTTAGAACTTGGAGAGCACTACCTTGTCGAGAAGGCATGGGAGGTGTACAAAGCAGGCGATCTTTTGCAGCTAATGGACCCTACACTAAAGGGAGAATTCCCTGAGAAAGAAGCCAACCGATTCCTGAAAGTGGGCTTACTTTGCGTGCAAGAGACTCCGAGCCTGAGACCGCAGATGGCGAAAGCAATGAACATGATGATGTCGGATGAGATGGAGATCAGAGACATCGAAATCACACAGCCGGGATTCATCACTGATTTGATGAATGTGAAGACAGCCTACAAGAACAGCACACAGAGCCCTATCTCCAAAATCTCTAGCAGCATCCTTACGCAGAGCTCAACGTCCACATTTTAA 1116 0.448 MKCFSFSRKKSFSPNLEVAISKNKEGVESPPNVHFFSYKELKVATQGFRSSNKIGEGGFGSVYKGRLQDGTFIAVKVLSVQSRQGDREFMAEITAMSNVRHENLVKLRGGCNSGTNRILVYDYMENSSLAQTLLGGEHNRSKFSWKARREIALGVARALTHLHENAKPHIVHRDIKASNILLDRNFNPKVSDFGLSKLFPDNITHISTRVAGTLGYLAPEYAITGHLTRKSDIYSFGVLLLEILSGRCIVDFDLELGEHYLVEKAWEVYKAGDLLQLMDPTLKGEFPEKEANRFLKVGLLCVQETPSLRPQMAKAMNMMMSDEMEIRDIEITQPGFITDLMNVKTAYKNSTQSPISKISSSILTQSSTSTF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01550 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Eupl05g01550 371 FunFam Serine/threonine-protein kinase receptor 18 123 - -
Eupl05g01550 371 Pfam Protein kinase domain 49 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g01550 371 Gene3D Transferase(Phosphotransferase) domain 1 124 333 - -
Eupl05g01550 371 CDD STKc_IRAK 54 312 - -
Eupl05g01550 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 354 - -
Eupl05g01550 371 ProSiteProfiles Protein kinase domain profile. 48 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g01550 371 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Eupl05g01550 371 SMART serkin_6 48 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g01550 371 Gene3D Phosphorylase Kinase; domain 1 12 123 - -
Eupl05g01550 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 332 - -
Eupl05g01550 371 SUPERFAMILY Protein kinase-like (PK-like) 30 353 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01550 Eupl-Chr5 39143030 39149191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01550 34 339 Receptor kinase-like Gene Family AT1G56120 52.941 2.37e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl05g01550 Pkinase 9.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01550 - - nnu:104594836 475.322