Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01537 ATGATGTCTGGAGACGGGCTTTCAATTCCCACTTCAATCAGAGGGTTTGCTCAAGAACCAAGTCCAAATCCTAATCCTAACCCAAACGGTAATCCAGTGGTGAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAGGTGATAGCTCTTTCACCAAAGACTCTCATGGCGACCAACCGATTTGTCTGCGAAATCTGCAACAAGGGTTTCCAAAGGGACCAGAACCTTCAGCTTCACAGAAGAGGTCATAACCTACCCTGGAAGCTCCGTCAGAGAACAAGCAAAGAGATCCGAAAGAAGGTCTACATATGCCCTGAGAAAAGCTGCGTGCACCACGATCCGTCGAGGGCTCTCGGAGATCTTACTGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCTAAGAAGTATGCAGTTCAGTCCGACTGGAAAGCTCATATTAAAACTTGTGGTACTAGAGAGTATAAATGCGACTGTGGAACAATTTTCTCCAGGAAGGATAGCTTCATCACCCACAGAGCCTTCTGTGACGCTTTAGCAGAAGAGAGTGCGAGAATCACTACGGTTGCAGCGACCAACTTAAACTTCAGAACAGATTCAATCAGTGATAACCCGGGAAATCCTCAATCTGCAGTGAGTATCCCTCAGTTCTGCTCGGTTTTCAGGCGGGATTTTTCCGGCGCGGACATGGTGAACGCTCTTGATGCCGACCGACAGAAGCCTAGTTTGTCACTTTGGCTGGATCAGGCCAATTCTCAGCTTAATCCCATTGATATGTCAGCTAATTCTAATGCATTCTTAGTCCCAACTTCGACTGGTTTACCGGAATTGGTGCAAATGGCATCCACAAATATATTTGGCACATCATCGATGGTTGAATATGGAGGAGGTATTCCAAATCAGTGGATCAACAGGTGTGCTGGGACATCAGCAGGTGCTAACCTCTCTCTATCGACTTCTGCTCAGAAACTAAGTGAAGAAGGGCGAAACAAAGGAAATATGGCGGAAAGCTTAGCCTCTTTGTATGCTAACAATCAAAACCAGAACCCTAATCCAGCCCACATGTCGGCGACCGCACTTTTACAGAAAGCAGCTCAAATGGGAGCTACAAGAAGCAATCCTTCATTCGTCGGTGCGTTCGGAGTACTGAGTTCATCTTCCTCTGATACCACAACCTTCAGTCCTCACTCCCAGAATAGAAATGAATTCCATCAGCTATTTCGGCAAGCAAAACAACCCGAGAACATAAACGATCTGCTGAATACAGCAAACAATCTCGACCATCTGATGTTGCCACCAAATGGAAAACAAGGTCGATCGGTTCCTTTAAAGCTTCATCTGAGTGCGAACGAAGTCGAGCATTGTCTAACGAGAGATTTCATGGGAGTAGGCGGCGACGCTAGCCATCCATTCTTACAGCGGGAGTTAGCCAAATTTGCTTCAATGGGTTCAGCTATGAACTTAAGTCAATACAGTGGCAGTCACTGA 1524 0.458 MMSGDGLSIPTSIRGFAQEPSPNPNPNPNGNPVVKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHIKTCGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARITTVAATNLNFRTDSISDNPGNPQSAVSIPQFCSVFRRDFSGADMVNALDADRQKPSLSLWLDQANSQLNPIDMSANSNAFLVPTSTGLPELVQMASTNIFGTSSMVEYGGGIPNQWINRCAGTSAGANLSLSTSAQKLSEEGRNKGNMAESLASLYANNQNQNPNPAHMSATALLQKAAQMGATRSNPSFVGAFGVLSSSSSDTTTFSPHSQNRNEFHQLFRQAKQPENINDLLNTANNLDHLMLPPNGKQGRSVPLKLHLSANEVEHCLTRDFMGVGGDASHPFLQRELAKFASMGSAMNLSQYSGSH* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01537 507 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Eupl05g01537 507 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Eupl05g01537 507 MobiDBLite consensus disorder prediction 1 47 - -
Eupl05g01537 507 FunFam protein indeterminate-domain 12-like 43 111 - -
Eupl05g01537 507 Gene3D Classic Zinc Finger 97 188 - -
Eupl05g01537 507 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Eupl05g01537 507 Gene3D Classic Zinc Finger 60 87 - -
Eupl05g01537 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 486 IPR031140 -
Eupl05g01537 507 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Eupl05g01537 507 SMART c2h2final6 64 86 IPR013087 -
Eupl05g01537 507 SMART c2h2final6 140 160 IPR013087 -
Eupl05g01537 507 SMART c2h2final6 105 135 IPR013087 -
Eupl05g01537 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01537 Eupl-Chr5 38958255 38961077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01537 34 495 IDZ Gene Family AT5G03150 47.879 1.85e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01537 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01537 K25870 - nnu:104594822 753.821