Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01531 ATGGGGCAGAGACACTTGTTCAGCAGATCCCAAATGTTTGAGATGGACCCTGATCAGAACCGAAATCATATACATGCTGAGCAGTCTTACGTGCACTTGGGCAGGGCCAGGGCTGCAGAGAATGGTTCTTCTGTTTTTCCTATTGAAAATATGTCCAATGGGGGAGTAAATTTTGTCTCTCCCTGGAATTCAGCACTGGGCTCAAATGAGTATTCTTCATCAAGTATCAGCACAGAATTACCACATTATAGGGCAGCTACTTCAGGCTCATCTTATGATCCCTTCCTGCACCCATCAGCTGCTGGAAGCTTATGTCCTGTCCCACAAAATTACGCTGACCTTTCTTCATCTTCTAGTTATTACAGACATGTAGGTCATGGAGTTGAAGGCAGCATTGGTAATCTTACAGTGGGCAATGGAAGGGGGGCATGCAAAAGAAAAAGCCCAGCAATTTCTGGGGTCTATGAGAGAGGCAGTACCAGCAGATCCTATAATGCTGGAAGTTCCTCCGATCTCTCTATTTCTTCTGATTTACAGCCGGAGAAGCCTATTTCAGGTTCCCAGCATTGGCCTTGGGATCCAATGAGTATAACCCCCAGTTATAGAGGGAGCAGTCTCTCAATTGTAGGGGAAGTTTCTCAGAGGAATGTGAGAAGCCGATCTACACTTGATTTGGAAGTGAACCTAGCTAGGACCCATCTATCAAGCAACCCATCTCGCCATCCCCGTTCAGTGGACCGACCAATAGACCATTCTGGCACCGTTGACCCTGCTGGCCCGAGTGCTAGTTCAACCACTCGGGAATGGAACCCTATTCCTGTTTCTCCTGCTGCTCGGTGGAGAATTCTATCTTCAGATACCAGTGGCTTGAGTCATGACGCGAATCAGTTCCTAGTGGGAAGCAGTAGTACTATTGGTTCTGTAGAGATTGGTGGGTACCATCACGACCACATTTCCAGCAGAAATCCTGTTGGTCTTCCACATAATCTTCATGGTCCCGTCACTCAAGCTGTAAGAGGAGATCGCAGTAGCTATGCTCAAAGAGCGATGCCTGCTTACAGGGCCATGTCTAGTTATCCCCGCTTGGGATCTATGGCAACTTCTGAGGATGGTCTGCAGTCGGTGCCAGAAAGTTATTCTTCCAGACATTCAAGGCCACTCTCTACAATTGGATGGCGTAACAGTGACAGGAATGGAAGATCAAGGATACCTTATAATAGATCGCGCTCACACTCTGATGGGGCAGATGCCCATGATAGATTTGTATCTGAGGGTCTTATGATGGTGGATCGCTCAGCCTTGTATGGTTCCAGAAATATGCTTGATCAGCATAGGGACATGAGGCTAGACATAGACAACATGAGTTATGAGGATTTACTTGCTCTGGGGGAAAGGATCGGGAATGTCAACACAGGCTTGTCAGAAGATCTGATCTCGAAGTGTTTGATGGAGACAATATATTGTTCTTCAGATCAAATCCAGGAGGAAGGAACTTGTGTGATCTGTCTGGAAGAGTACAAGAACAAGGAGGAGGTTGGGACACTGAGGAAATGTGGACACGATTACCATATGGGGTGTATCGAGAAATGGTTGTCAACAAAGAACGTGTGCCCCATCTGCAAGGCTCCTGCTCTGACAGATGGTTTGAAGAAGAATTAA 1659 0.4684 MGQRHLFSRSQMFEMDPDQNRNHIHAEQSYVHLGRARAAENGSSVFPIENMSNGGVNFVSPWNSALGSNEYSSSSISTELPHYRAATSGSSYDPFLHPSAAGSLCPVPQNYADLSSSSSYYRHVGHGVEGSIGNLTVGNGRGACKRKSPAISGVYERGSTSRSYNAGSSSDLSISSDLQPEKPISGSQHWPWDPMSITPSYRGSSLSIVGEVSQRNVRSRSTLDLEVNLARTHLSSNPSRHPRSVDRPIDHSGTVDPAGPSASSTTREWNPIPVSPAARWRILSSDTSGLSHDANQFLVGSSSTIGSVEIGGYHHDHISSRNPVGLPHNLHGPVTQAVRGDRSSYAQRAMPAYRAMSSYPRLGSMATSEDGLQSVPESYSSRHSRPLSTIGWRNSDRNGRSRIPYNRSRSHSDGADAHDRFVSEGLMMVDRSALYGSRNMLDQHRDMRLDIDNMSYEDLLALGERIGNVNTGLSEDLISKCLMETIYCSSDQIQEEGTCVICLEEYKNKEEVGTLRKCGHDYHMGCIEKWLSTKNVCPICKAPALTDGLKKN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01531 552 ProSiteProfiles Zinc finger RING-type profile. 499 541 IPR001841 -
Eupl05g01531 552 Pfam Ring finger domain 498 541 IPR001841 -
Eupl05g01531 552 CDD RING-H2_RNF24-like 497 544 - -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 400 416 - -
Eupl05g01531 552 SMART ring_2 499 540 IPR001841 -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 365 399 - -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 257 271 - -
Eupl05g01531 552 SUPERFAMILY RING/U-box 487 545 - -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 155 183 - -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 365 416 - -
Eupl05g01531 552 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 464 545 - -
Eupl05g01531 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 545 IPR013083 -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 232 271 - -
Eupl05g01531 552 MobiDBLite consensus disorder prediction 155 191 - -
Eupl05g01531 552 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 120 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01531 Eupl-Chr5 38903579 38906693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01531 1 550 C3H Transcription Factor Family AT2G37150 42.068 1.93e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01531 - - nnu:104594819 704.516