Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01490 ATGGCGGATGAAAATGACATCCAGTCCGATCTCGACCTCGCCTTTCACTTGCAGATGCAGGAAGCCATGACCGAGTCTCTTGTCCTTCAACCCCCAATCGCCGATGAAGAAGACATCTGTTACGCTCAAACCTTAGAACTGTTGGAGAAATTCGAGCAAGAAAGTAAGGATCAGGAGCAATGGGAAGCCGAGATGCGTAGACTCCAGGACGATCTCAAGCGTCGGGTTCACGATCAGAAGTTCGCGCTACAGATTCACCAGATTCCTGAAGAACATTGGCAAAGAGACGGAGACTATGTCCAGAGGCCGTTCGGTGAGGGTTCCTCCTCTGCTTCTCCGGCGGTGATCAATGATGATGAACCCTTTAGGTTGTATTTCAAGGGTTTGTTTGGTGATGAGAGAATTGGTGACGAGTCGAAAGTAGTTACGATCGCGGCGATCGGTGCTGCGGTTTGCGATCCTCGTGGTAATTTGATTCTGAACGTACAGAAGCCATTGCTGGGTGATTGGAAGAGTGATTGGGCCGCAGAGGACCTAGAGCTGAAGGTGGAAGTGAAGGCTTTGATCGAAGGTCTCGGTGCTGCTCTTTCTTTGGATATAAAGAGGATCGACTTCTTCTGCGATTACTACCCGCTCTACCAATATATTACAACGAGATGGCTAGTCAATCAGCAGAAAATTGCAACAATAGTCGACCAGGTGTGTCTTCTTCAAAGAAATTTTGAGAGTTGCCGCCCCTTCTTCGTGGCACGAAAGGATGTTAAGTTAGCATTTAAACTGGCAAGGGATGCAATAGATTCTCAGATCACAAGGTCCGCAAAAGATAGCCGTGCTAAGGCTTTGAATGAGACTTGCAGAATTTGTTTGGAAGACACTGATGTTGGCCAAATGTTTGCTGTTGATGGTTGCTTGCACCGCTATTGCTTTTCTTGTATGAAACAGCACGTGGAAGTCAAGGTACTTTATGGAATGGTGCCTAGATGCCCTCATGAAGGCTGTAAGACCCAGCTGAATATCGATAGTTCTAGAAAATTTTTGTCCCCTAAGATCATTGAGATGATGAGCCAACGTATAAAGGAGGCTTCGATTCCTGCAACGGAAAAACTTTATTGCCCATATCCGAGGTGCTCTGCATTGATGTCAAGAAATGAGGTTCTACAATGTGCCAATGGTGTATCTATTGGAGCTTATCATTCCGGAGTCGGGAAATGTATTAAATGCAATGGCCTTTTCTGTATAAATTGCAAGGTCCCATGGCATAGTAACATGACCTGTCATGATTATAAAATGTCAAATCCTTATCCACAAGATGCAAAGCTGAAGTCTCTTGCAACACAAAAGTTGTGGCGTCAGTGTGTGAAGTGCAACCATATGATTGAACTGGCTGAAGGTTGCTACCACATCACTTGCAGGTGTGGTTATGAGTTCTGTTATACCTGTGGAGCCGAATGGCGACACAAGAAAGCAACATGTTCTTGTCCAATCTGGGATGAAGATAATTTACTGGATAACCGACGAAGACGAAGGTGA 1530 0.4549 MADENDIQSDLDLAFHLQMQEAMTESLVLQPPIADEEDICYAQTLELLEKFEQESKDQEQWEAEMRRLQDDLKRRVHDQKFALQIHQIPEEHWQRDGDYVQRPFGEGSSSASPAVINDDEPFRLYFKGLFGDERIGDESKVVTIAAIGAAVCDPRGNLILNVQKPLLGDWKSDWAAEDLELKVEVKALIEGLGAALSLDIKRIDFFCDYYPLYQYITTRWLVNQQKIATIVDQVCLLQRNFESCRPFFVARKDVKLAFKLARDAIDSQITRSAKDSRAKALNETCRICLEDTDVGQMFAVDGCLHRYCFSCMKQHVEVKVLYGMVPRCPHEGCKTQLNIDSSRKFLSPKIIEMMSQRIKEASIPATEKLYCPYPRCSALMSRNEVLQCANGVSIGAYHSGVGKCIKCNGLFCINCKVPWHSNMTCHDYKMSNPYPQDAKLKSLATQKLWRQCVKCNHMIELAEGCYHITCRCGYEFCYTCGAEWRHKKATCSCPIWDEDNLLDNRRRRR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01490 509 FunFam RBR-type E3 ubiquitin transferase 280 365 - -
Eupl05g01490 509 CDD Rcat_RBR_unk 449 484 - -
Eupl05g01490 509 CDD BRcat_RBR_unk 365 428 - -
Eupl05g01490 509 SUPERFAMILY RING/U-box 284 365 - -
Eupl05g01490 509 SUPERFAMILY RING/U-box 434 500 - -
Eupl05g01490 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 364 IPR013083 -
Eupl05g01490 509 ProSiteProfiles Zinc finger RING-type profile. 285 329 IPR001841 -
Eupl05g01490 509 Pfam IBR domain, a half RING-finger domain 366 425 IPR002867 GO:0008270
Eupl05g01490 509 Pfam IBR domain, a half RING-finger domain 438 491 IPR002867 GO:0008270
Eupl05g01490 509 Pfam Zinc finger, C3HC4 type (RING finger) 285 323 IPR018957 GO:0046872
Eupl05g01490 509 Pfam Reverse transcriptase-like 143 264 IPR002156 GO:0003676|GO:0004523
Eupl05g01490 509 Coils Coil 51 71 - -
Eupl05g01490 509 Gene3D - 423 509 - -
Eupl05g01490 509 FunFam RBR-type E3 ubiquitin transferase 423 509 - -
Eupl05g01490 509 FunFam RBR-type E3 ubiquitin transferase 122 268 - -
Eupl05g01490 509 ProSiteProfiles TRIAD supradomain profile. 281 497 IPR044066 -
Eupl05g01490 509 Gene3D - 136 274 IPR036397 GO:0003676
Eupl05g01490 509 ProSitePatterns Zinc finger RING-type signature. 303 312 IPR017907 -
Eupl05g01490 509 SMART ibrneu5 432 491 IPR002867 GO:0008270
Eupl05g01490 509 SMART ibrneu5 352 425 IPR002867 GO:0008270
Eupl05g01490 509 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 224 496 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01490 Eupl-Chr5 38338270 38343994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01490 122 482 C3H Transcription Factor Family AT2G19610 35.422 1.66e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01490 - - psom:113298550 657.907