Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01489 ATGGACGGAGACGAAATACAGATATTAGTTGAAGAGCAGCGGCGAGAATTAATGGCAGCTATAGATCTCGAATCCGATCTCGATTTAGCGTATCGATTACAGATGGAGGAAGCCATGGTTGCATCTCTTGCCCTTCAACCTTCCTCCTCGTCTTCGACATCTGCACTACCTCTATTAATGGAGTCCCAATTCGCTGAATCGGACGACGACGTATCTCAACTCACGAATCTTCAAACCCTAGAACTGGACAAGTTCCAGCAAGAACGTAAGGATCGCGAGCAATGTGAATCCGAGATGCGCAGACTCTCTGACGATCTCAATCGTCGGATTCACGATCAGAAGTTCGCGCGAGAGATTCATCAGGTTTCTGAACAAGATTGGCAAAAGTACGGAGACAACTTGGAAAAGCCTTTTGGTGAGGGTTCTTCTTCATCTCCGGTGATCGATGAAACGTTCAGGTTGTATTTCAAGGGTTTGGTTAGCGATGAGACGGTTCGGGGTTCGAAGGTTACGCTTGCGGCGATCGGGGCTGCAATTTGCGATCCTGGGGATACTTTGCTTCTGAAGGTACAGAAGCCGTTGATCGGCGATTTGAAGAATCATCGCACCGTAGAGCTGATGGCTTTGATCGAAGGTCTCAATGCCGCTCTTTCTATGGATGTAAAGAAGATCGACTTCTTTTGCGATTACTTCCCGCTCTACCAACATATTACAAGGAGATGGAGAGTGAAGCAAGGCAAGATTGCAACATTAGTCAATCAGGTGTTTCTTCTTCAAAGAAAGTTTGAGAGTTGCCGCCCATTCTTGCTGGCACGAAATGATGTTAAGTTTGCATTTAAACTGGCAAGGGATGCAATAGATTCTCAGATCACAAGGTCTGCTGAATCTAGCCATGCTATGAAATTGAATGAGACTTGCAGCATCTGTTTGGAAGATACTGATGTCAGCCAAATGTTTGCTGTTGATGGTTGCACGCACCGCTATTGCTTTTCTTGTATGAAACAGCATGTGGAAGTCAAGGTACTTCATGGGATGGTTCCTGGATGCCCTCATGAAGGTTGTAAATCTCAGTTGAATCTCGATAGCTCTAGAACATTCTTGTCCCCCAAGTTAGTTGAGATGATGAGCCAACGTATAAAGGAGGCTTCTATACCTGTAACAGAGAAACTTTATTGTCCATACCCAAAGTGCTCTGCATTGATGTCAAAAAGTGAGGTTCTAGAATATGCCAATAATGTATTTATTGGTGCTAATCGATCTGGAGTCAGGAAATGTATCAAATGCCATGGACTTTTCTGTATCAATTGCAAGGTCCCATGGCATAGTAACATGAGCTGCCATGATTATAAAAGGTTAAATCCTTATCCACGTGCAGAAGATGCGAAGTTGAAGTCTCTTGCAACACAAAATCTGTGGCGCCAGTGTGTGAAGTGCAATCATATGATTGAACTGGCTGAAGGTTGCTACCACATGACTTGCAGGTGCGGTTACGAGTTCTGCTACACCTGTGGAGCAGAGTGGAAAAACAAGAAAGCAACGTGTTCTTGTCCACTCTGGGTTGAAGAGAATATTTTGTTCGACGATGATGAAGTCTCTGGTGAAGAAGATGAAGATGATTATGACAGCTTGTACTCCTCTGATGAGTATGACGACGACACAGTAATCCGGTACTTTTATTAA 1680 0.4423 MDGDEIQILVEEQRRELMAAIDLESDLDLAYRLQMEEAMVASLALQPSSSSSTSALPLLMESQFAESDDDVSQLTNLQTLELDKFQQERKDREQCESEMRRLSDDLNRRIHDQKFAREIHQVSEQDWQKYGDNLEKPFGEGSSSSPVIDETFRLYFKGLVSDETVRGSKVTLAAIGAAICDPGDTLLLKVQKPLIGDLKNHRTVELMALIEGLNAALSMDVKKIDFFCDYFPLYQHITRRWRVKQGKIATLVNQVFLLQRKFESCRPFLLARNDVKFAFKLARDAIDSQITRSAESSHAMKLNETCSICLEDTDVSQMFAVDGCTHRYCFSCMKQHVEVKVLHGMVPGCPHEGCKSQLNLDSSRTFLSPKLVEMMSQRIKEASIPVTEKLYCPYPKCSALMSKSEVLEYANNVFIGANRSGVRKCIKCHGLFCINCKVPWHSNMSCHDYKRLNPYPRAEDAKLKSLATQNLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYTCGAEWKNKKATCSCPLWVEENILFDDDEVSGEEDEDDYDSLYSSDEYDDDTVIRYFY* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01489 559 Coils Coil 85 105 - -
Eupl05g01489 559 Gene3D - 154 294 IPR036397 GO:0003676
Eupl05g01489 559 SUPERFAMILY Ribonuclease H-like 173 287 IPR012337 -
Eupl05g01489 559 SUPERFAMILY RING/U-box 461 522 - -
Eupl05g01489 559 ProSiteProfiles Zinc finger RING-type profile. 306 350 IPR001841 -
Eupl05g01489 559 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 142 517 IPR031127 GO:0004842|GO:0016567
Eupl05g01489 559 SUPERFAMILY RING/U-box 305 385 - -
Eupl05g01489 559 ProSiteProfiles TRIAD supradomain profile. 302 520 IPR044066 -
Eupl05g01489 559 CDD Rcat_RBR_unk 472 507 - -
Eupl05g01489 559 Pfam Reverse transcriptase-like 169 285 IPR002156 GO:0003676|GO:0004523
Eupl05g01489 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 383 IPR013083 -
Eupl05g01489 559 FunFam RBR-type E3 ubiquitin transferase 152 289 - -
Eupl05g01489 559 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Eupl05g01489 559 Gene3D - 444 551 - -
Eupl05g01489 559 CDD BRcat_RBR_unk 386 449 - -
Eupl05g01489 559 SMART ibrneu5 456 516 IPR002867 GO:0008270
Eupl05g01489 559 SMART ibrneu5 373 446 IPR002867 GO:0008270
Eupl05g01489 559 FunFam RBR-type E3 ubiquitin transferase 444 555 - -
Eupl05g01489 559 FunFam RBR-type E3 ubiquitin transferase 301 386 - -
Eupl05g01489 559 Pfam IBR domain, a half RING-finger domain 389 446 IPR002867 GO:0008270
Eupl05g01489 559 Pfam IBR domain, a half RING-finger domain 459 514 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01489 Eupl-Chr5 38324142 38333397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01489 132 505 C3H Transcription Factor Family AT2G19610 34.565 7.84e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01489 - - nnu:104594769 781.941