Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01477 ATGACGATGAGCAATGGTATCGGGCAGTTCGGAGATACGACGCTCACTAAGGTGTTCGTTGGTGGATTAGCATGGGAGACTCAGAAGGAAGCGTTGAGAGAGCACTTTGAGAAGTATGGTGAGATCTTAGAGGCTGTGATCATCTCTGATAAGATCACCGGTAGATCCAAGGGCTACGGATTTGTGACGTTTAAGGAGGCGGAATCTGCAAAGAAGGCCTGCGAGGACGCAACTCCGGTAATCAATGGGCGCCGAGCCAACTGCAATCTGGCTTCGCTGGGGGCGCGACGACCAAGGTCTTCGACTACGACGACACCTCAGCAAGGATCATACGTTGGACCGAGATCCACGTCACCAGCGCCGGCAAATCAAGTACAATGGTACTACCCAACGGGTACACCGGCCTCGCCCTTCCATCATCATCATCATCACGCCGTTCCCTTCCATCCCTACGGATACTCTCCAACCTACATTACAACTGACATCGGTTACAACCCGAAGTTAAGCTACACCGGTGGGTCCTACGTGAACGGGCATTTCTCCCAGGTATATCCAGGGCAAGGGATGGTGAGTGCAAACACGATGATGCCAGTGTATCCGTTTTATCATTATCATCAATCACAGACGATGGGAGTTCCTGCTCACGTCTTCCCGCCTTCGACGGTGGGCCCAATGACTACCATCCCAGCAGTTATCTCCAAGCCTCCTGCAATGGCTCCTAACTCAGGTAGATACATTACAAGCTGTAGTCGCCTTACATACAAACATACAAAGTCAAGTCAACATTACAGACAGGAATGA 801 0.5119 MTMSNGIGQFGDTTLTKVFVGGLAWETQKEALREHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAESAKKACEDATPVINGRRANCNLASLGARRPRSSTTTTPQQGSYVGPRSTSPAPANQVQWYYPTGTPASPFHHHHHHAVPFHPYGYSPTYITTDIGYNPKLSYTGGSYVNGHFSQVYPGQGMVSANTMMPVYPFYHYHQSQTMGVPAHVFPPSTVGPMTTIPAVISKPPAMAPNSGRYITSCSRLTYKHTKSSQHYRQE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01477 266 MobiDBLite consensus disorder prediction 93 125 - -
Eupl05g01477 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Eupl05g01477 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Eupl05g01477 266 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Eupl05g01477 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Eupl05g01477 266 Gene3D - 10 97 IPR012677 -
Eupl05g01477 266 MobiDBLite consensus disorder prediction 94 125 - -
Eupl05g01477 266 CDD RRM_RBM24_RBM38_like 16 91 - -
Eupl05g01477 266 PANTHER BOULE-RELATED 5 226 - -
Eupl05g01477 266 FunFam Putative RNA-binding protein ARP1 10 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01477 Eupl-Chr5 38131650 38134514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01477 12 92 C2H2 Transcription Factor Family AT2G19380 44.444 1.58e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01477 - - nnu:104588667 407.527