Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01476 ATGTACGTAACGAGCGGCGAGAGCATGCAGGACCGCTCGATGGAATCGAGCGACATTGCCATTGCGGATTTCTTGGCCGCCTATTTCACCGAAACCGATTTTTCGGTGGACGATAGGAGGTTGAAGCTGGTAACTCAGCTTGCTCACTTCTTCTCCACTCCACCAGGAGAAAATCTCGTTTCGCAGGTAAAAGATGATGATGGCCTCTTCTTTTTGCCACTTGATCTCCAACAACTTAAAAAAATTTGTGAAGTAAAGGAATTTTATGAAGCTCTAGAGATAGAGCCTAAGGAAGCCCTCTCATGCATGGGTGCTGCAGTTCATAAGGTTCTGTTGCCCAAGTGGCAGAACTGCCAATTGGATGATGGCGTGAAGATAAACATTCGGTTGCATAACTACCCTGAATCAATGATTGCTTTGAAGAACTTAAAAGCTGCCTATATTGGCAGACTTGTTTCAGTGCGTGGTACTGTTGTCAAAGTGAGCACTGTCAGGCCTCTAGTGGTACAAATGAACTTTGCATGTGCGAAGTGTGGAGCTGTAATTATGCGCACATTTCCTGATGGAAAATTCTCACCACCAGCCATTTGTGTCTATGGATGCAAGAGCAGAACGTTTAACCCAATTAGATCCACTGCTAGACTCCTAGATTTTCAAAAGATAAGACTTCAGGAACTGCTGAAGTCTGAAAATCATGAAGAAGGCAGGGTACCTCGAACTGTAGAGTGTGAGCTGACTGAAGATCTTGTTGATGCATGTGTACCTGGCGATGTGGTGACTGTTACTGGACTTATAAAAGTAATTAACAATTACATGGATGTTGGAGGAGGGAAGTCAAAAAACAAGAATCAAGGTTTATATTATTTGTATCTAGAAGCAGTTTCAATTAAGAATTCCAAGTCTCAATCTATACCTGAGGATTTGCAAGGTACTAGTGCTGATGTTAGAGCTACGGAGCTGTTTGATTTGTACTCGTTTTCGCCAAGGGATTTGGAATTTATTGTTAAGTTCTCAGAGGAGCATGGTTCGGATGTCTTCCGTCAAGTACTTCAATCTATTTGTCCTTCCATCTATGGACATGAGCTTGTTAAAGCGGGGATAACACTGGCACTGTTTGGAGGTGTACGAAAGCATTCGATGGATCAGAACAAGGTGCCTGTTCGAGGAGACATTCATATCATCGTTGTTGGTGATCCTGGATTAGGTAAGAGCCAACTACTGCAAGCAGCTGCAGCTATTTCTCCACGGGGTATCTATGTGTGTGGTAATGCAACAACAAATGCTGGCCTCACTGTAGCTGTTGTGAGGGATCCTATGACAAGTGACTATGCGTTTGAGGCTGGTGCCATGGTACTTGCAGACCGTGGATTATGTTGTATTGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCTCTCCTAGAAGCCATGGAGCAACAATGTGTCTCTGTTGCAAAGGCTGGACTGGTAGCAAGTTTATCAGCGCGAACTTCTGTGTTAGCAGCAGCAAACCCTGTTGGGGGTCATTATAACCGTGCAAAAACCGTCAACGAGAATTTGAAAATGAGTGCCGCTCTCCTCTCACGATTTGATTTGGTCTTCATTTTACTGGACAAACCAGACGAACTGCTGGATAAGCAACTGTCCGAGCACATTATGTCACTTCACGCAGGATATGGAGAGCAGTCACCGGCACCAAAGAAGCTATGTAGAGCACTGCAAATAGATAGAGACATAGATTTGGGTGTAAAAAGTGGTTCCCTAGCTTCAAGGTTGAGACTTGACCCAAAGAATGACACAGATTTTGTGCCCTTGCCTGGTTCACTTCTTCGCAAATATATTGCTTATGCAAGGACTTTTGTCTTCCCTAGGATGTCAAGACCGGCAGCAGAAATTATACAGAAGTTTTACTTACGATTGAGAGACCATAATAATTCAGCTGATGGTACACCAATAACGGCACGGCAGCTGGAAAGTCTAGTGAGGCTGGCAGAAGCTCGAGCTCGGTTGGATTTAAGAGAAGAAATAACAGCCCAAGATGCTTTGGATGTGGTTGAAATAATGAAAGAATCCTTGTACGATAAATATGTAGATGAGCACGGCTTTGTGGACTTTGGCCGGAGTGGTGGGATGAGTCAACAGAAAGAAGCAAAACGATTTTTAACTGCACTCAATAAACAATCAGAATTGCAGCAAAAAGATTGCTTTTCGATTTCTGAAATATACAGTTTGGCAGATAGGATTACCCTGAGAGTTCCTGATATTGACACATTCGTGGATAACTTGAACAGCATTGGTTACCTACTTAAGAAGGGACCAAAGATGTATCAGGTTTTGTCATCGTCTTACTCTCGGAGTCAATCATCAAGGTCAAGGAACTAA 2382 0.4332 MYVTSGESMQDRSMESSDIAIADFLAAYFTETDFSVDDRRLKLVTQLAHFFSTPPGENLVSQVKDDDGLFFLPLDLQQLKKICEVKEFYEALEIEPKEALSCMGAAVHKVLLPKWQNCQLDDGVKINIRLHNYPESMIALKNLKAAYIGRLVSVRGTVVKVSTVRPLVVQMNFACAKCGAVIMRTFPDGKFSPPAICVYGCKSRTFNPIRSTARLLDFQKIRLQELLKSENHEEGRVPRTVECELTEDLVDACVPGDVVTVTGLIKVINNYMDVGGGKSKNKNQGLYYLYLEAVSIKNSKSQSIPEDLQGTSADVRATELFDLYSFSPRDLEFIVKFSEEHGSDVFRQVLQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHIIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTNAGLTVAVVRDPMTSDYAFEAGAMVLADRGLCCIDEFDKMSAEHQALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKQLSEHIMSLHAGYGEQSPAPKKLCRALQIDRDIDLGVKSGSLASRLRLDPKNDTDFVPLPGSLLRKYIAYARTFVFPRMSRPAAEIIQKFYLRLRDHNNSADGTPITARQLESLVRLAEARARLDLREEITAQDALDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLTALNKQSELQQKDCFSISEIYSLADRITLRVPDIDTFVDNLNSIGYLLKKGPKMYQVLSSSYSRSQSSRSRN* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01476 793 SMART mcm 136 693 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 CDD MCM8_WHD 714 779 - -
Eupl05g01476 793 Pfam MCM P-loop domain 342 556 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 Gene3D - 140 269 IPR012340 -
Eupl05g01476 793 SMART AAA_5 389 541 IPR003593 GO:0016887
Eupl05g01476 793 FunFam DNA helicase MCM8 isoform X1 167 216 - -
Eupl05g01476 793 Gene3D - 323 701 IPR027417 -
Eupl05g01476 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 388 403 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 448 462 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 Pfam MCM AAA-lid domain 609 692 IPR041562 -
Eupl05g01476 793 SUPERFAMILY Nucleic acid-binding proteins 68 269 IPR012340 -
Eupl05g01476 793 CDD MCM8 349 691 - -
Eupl05g01476 793 Coils Coil 460 480 - -
Eupl05g01476 793 ProSiteProfiles MCM family domain profile. 345 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 698 IPR027417 -
Eupl05g01476 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 45 729 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl05g01476 793 Pfam MCM OB domain 140 268 IPR033762 -
Eupl05g01476 793 Gene3D - 167 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01476 Eupl-Chr5 38103501 38120183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01476 1 779 Core DNA Replication Machinery Family AT3G09660 72.102 0.0 1163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01476 K10737 - msin:131253246 1286.17