Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01472 ATGACGAGTTGCCGGTTTCTGGTAATCAATGGTGTTGTCTCTGAAACCTCCGACGTTCCTCCCATCGCGTCCTTCCTCGAAGCTCATCCAGGCGCTTATACGGCCTCTCGCACCCACAACAGTGCTTCTTTTATCATGTTTTGGGAGAGACATTTGCGAAGACTTGCTGATTCTGCCAGAGTTCTAGCCGAATCAAGACCAGATTTCCTGTTTGCTTCAGACAAAACTAGGGTTTCTTCTTCGGCATCGTCGTTGTCATCGTTGGAATCCATAAATTGGCCTATTGTTAACGATTCGCTGCGAAGAGTGCTTCCGATCGCATTGAAGGAAAGGAGCAGCACAGAGGAATTAACAATTACTGTTCTTGTAAGCGGGAATTTAAATAATGCGAAAGAAGACGAAGAAGATAAAGAACAAAGTAGGATTTTTAGGGGTTTTAATCTGTACGTGCACGTCGGGGTTTATGTTCCACCTGTGTTTGGCATTAGAGAAAGTGGTCAACATTTAGCTGTCGTTGGTCATGGAAGAGACAATGCGAGGGCGAAGTCCTCAGAGTGGGTAAGACTTAGGAAGCGTTTGGAGAATTTGAGGCCTCCTTCAGCAACTGAACTCTTGTTGTCCAATGATGGTGATCGGATACTCGAAGGCTGTGTGACAAATTTCTTCGTCGTTTCTCGCAAGGAGAATAATGATGCTCTTGGGAAATGCCTGTTTGATCCCAAAAGTGGGTATTCTTTTGAAGTACTGACAGCTTCTATCAGCGATGGTGTCCTTCCAGGAGTTATACGTCAATTAGTCATTGAGTTGTGCTCGACCCGGGGAATCTCAGTCCGAGAAGTTGCACCATCATGGTTAAAGCGTGAACTTTGGGAAGAAGCCTTTATTACAAACAGCTTGAGACTTGTGCAGCACGTGGAGACAATCCGAGTTCCCAGTTCGTGGGAACTATCAGAACTGAAAACATGGGAGGATGTATCATGGGAGGAGAAACGATTTAAGGAGGGCCCTGGGATCATCACTGCAGAAATCCAGAGAGAGATAATGAAGAGAGCAGAACTTGAAGGATACCTAGTTAAGAGCTACTCCTTGATTGGACAGTCCAGATCAAATTGGTTCACAGATAAGCGACAACCTGCCACTAGTGGGGACCGAGGCCTTAGCAGCGTCCGATCTCCCTCTTTGGGGAAAAAACCTCCATCAATCCTCTCTACGACGCGCGCCAAATACAAACAACCAAAGGTTCAGGTGACCATGTCCGACGCTCCGGCGAGTCCAGCCGGCGGAAGCCACGAGAGCGGCGAGCATAGCCCGCAGTCGAACGTTCGAGAGCAAGACAGGTACCTCCCGATAGCTAATATCAGCCGGATCATGAAGAAAGCGCTCCCGGCCAACGGCAAGATCGCTAAGGATGCAAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTTATCAGTTTCATCACCAGCGAGGCGAGCGATAAATGCCAGAGAGAGAAGCGGAAGACGATTAATGGCGATGATCTGTTGTGGGCAATGGCAACGTTAGGGTTTGAAGATTACATCGATCCGCTGAAGGTGTACCTGAATAGGTACAGGGAGATGGAGGGTGACACCAAGGGAACTGCCAAGGGTGGAGATGGGTCCTCTAAAAAAGACGCAGTTGGTCAAAACGCTCAGATGACGAGTTTCATCGCTAAGCCGATGAAACACGACGAACTGTCATTTGAAAAAAGTGTGGGAGACTTTGCGATGCATTTAAGAGGGATCACCGTGTTGGATTGTTGCAGTTCTTCTCTCTTCTCAGTTATTCACGTCCTCTCATGGTCAACAATGGATACAAACCTCATGTCTTCTTAG 1854 0.4768 MTSCRFLVINGVVSETSDVPPIASFLEAHPGAYTASRTHNSASFIMFWERHLRRLADSARVLAESRPDFLFASDKTRVSSSASSLSSLESINWPIVNDSLRRVLPIALKERSSTEELTITVLVSGNLNNAKEDEEDKEQSRIFRGFNLYVHVGVYVPPVFGIRESGQHLAVVGHGRDNARAKSSEWVRLRKRLENLRPPSATELLLSNDGDRILEGCVTNFFVVSRKENNDALGKCLFDPKSGYSFEVLTASISDGVLPGVIRQLVIELCSTRGISVREVAPSWLKRELWEEAFITNSLRLVQHVETIRVPSSWELSELKTWEDVSWEEKRFKEGPGIITAEIQREIMKRAELEGYLVKSYSLIGQSRSNWFTDKRQPATSGDRGLSSVRSPSLGKKPPSILSTTRAKYKQPKVQVTMSDAPASPAGGSHESGEHSPQSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREMEGDTKGTAKGGDGSSKKDAVGQNAQMTSFIAKPMKHDELSFEKSVGDFAMHLRGITVLDCCSSSLFSVIHVLSWSTMDTNLMSS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01472 617 Pfam Amino-transferase class IV 44 306 IPR001544 GO:0003824
Eupl05g01472 617 SUPERFAMILY Histone-fold 444 548 IPR009072 GO:0046982
Eupl05g01472 617 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 447 511 IPR003958 -
Eupl05g01472 617 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 19 308 IPR036038 GO:0003824
Eupl05g01472 617 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 357 - -
Eupl05g01472 617 Gene3D - 162 359 IPR043132 -
Eupl05g01472 617 PRINTS CCAAT-binding transcription factor subunit A signature 494 512 - -
Eupl05g01472 617 PRINTS CCAAT-binding transcription factor subunit A signature 475 493 - -
Eupl05g01472 617 PRINTS CCAAT-binding transcription factor subunit A signature 513 531 - -
Eupl05g01472 617 FunFam Nuclear transcription factor Y subunit B-3 436 561 - -
Eupl05g01472 617 ProSitePatterns NF-YB/HAP3 subunit signature. 478 494 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl05g01472 617 Gene3D Histone, subunit A 433 571 IPR009072 GO:0046982
Eupl05g01472 617 MobiDBLite consensus disorder prediction 373 443 - -
Eupl05g01472 617 MobiDBLite consensus disorder prediction 373 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01472 Eupl-Chr5 38057679 38076355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01472 434 568 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.676 1.47e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl05g01472 Aminotran_4 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01472 - - psom:113361891 486.108