Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01439 ATGGGAAGTGTTCCAGTGAACACTGATGGTACTGGTAATAAAGGGTTGGCGGAGCTAAATTACCACACGCGAGATGAGCACAAGGAAGTTAGGGATGGAGTTGTGGGTGAGGGCCAGGGTCTCTCGGAGGAAGATGAGTCAAGGATTAATGAGGTTGCCGAAGATGTAAACAATGGGTGTGAAGGTGCCCTAGTCCAGGCCCAGGTCGGTCTGCAGAAACAGCAGCAACAACCTCAAGGGCCAGTGGTTCGTTGGGAGAGGTTTCTCCCTCTTAGGACGCTGAGGGTTCTGCTGGTGGAAAATGATGACTCAACACGCCATGTTGTCAGTGCGCTTCTTCGTAATTGTAGCTATGAAGTTACTGCTACTGCAAATGGTCTACAAGCATGGCAAATCTTACAAGATCTGACCAATCACATTGATCTTATCTTAACTGAGGTAGTCATGCCTTGTTTATCCGGCATTGGTCTTTTATGCGAGATTATGAGCCACAAAACTTGCAACAATATTCCTGTGATTATGATGTCATCCCATGATTCTATGGGTATTGTCTTTAAGTGCTTGTCAAAGGGTGCAGTTGACTTTTTAGTGAAGCCTATTCGAAAAAATGAGCTTAAAAACCTTTGGCAGCATGTTTGGAGGAGATGCCACAGTTCTAGTGGTAGTGGTATACAGACTCAAAAATCTGCGAAGTCAAAGAGTATTGAAGAGTCTGACAACAATACTGGCAGCAATGATGAGGATGATAATGGGAGCGTTGGTTTGAATGTCAGGGATGGAAGTGACAATGGAAGCGGGACTCAGAGCTCCTGGACAAAACGGGTAGTAGAAGTTGACAGCCCCCAACCAATGTCTCCATGGGATCAATTAGCCGATCCCCCCGATAGCACCTGTGCCCAGATTATCTATCCAAAACCTGAAGCATTTGGCAACGAGTGGGTACCTATCACTGCAACAAAGGAGTGCCAGGAACAGGATGAAAAACTTCTTGACAATGTTGCAATGGGCAAAGACTTGGAGATAGGAGCACCTCGAAATCCAGATTTAGAACATGAATATACAAGCAAGAAGGTTTCTACCAACGTAACAGGCACAAAGCAGGATAACTTGCCTGTATTAGACCTCGAAAAAGATAATGAACAATTAGATAAAGGACTGGTGGAATTCAACAGAGAGAAGCCTACTGGCGAGCTGAGGGCCCAAGCTGCTGACGTCACAGGTTCTATCACCAATAGTACCAACCCTCAGGTAGAAACCGGAGTCTTTGAGGATCCAAGTGGCCTGTCCAATATTTCAGAAATCAAAGATAAGGCCACTTCTGATATTAAAGTACTACCGTCCCTTGAGCTGAGTTTAAAGAGGCTGAGAGAAGTTGGAGATGTTGGGACAGCCACTTATGACGACCGCAATGTTTTGAGACATTCAGACCTTTCAGCCTTTTCAAGGTACAACACTACCTCTACTGCTAACCAGGCTCCCACTGGAAACATAGGAAGCTGTTCACCACTTGATAATAGCTCAGAAGTGTTGAAGACAGAGTCAATGTACAGTTTTCCATCCAATTCAAATGACAATCCTCCCAATCAGCGATCCAATGGGAGTAGCAACAACAATGACATGGGCTCCACCACTAAAAACGTTTTTACCAAGCCAGCAGTTTTCAACGATAAGTCGGCGTCCACATCAACAGCAAAATGTATGAACTCCTCTGCCTTCCAACCTGTACAGAAGGGTCGTACATGTCCACCTCAGCAAGTCATGCCTGAGAAAGCCAATGATGTAGTAGTTAATGTAGGACTGGCACAACCAAGTGGAGCACAGCAGCAGGTCCAAGTCCAGCACCACCATCACCACCATCACCACCATGTCTACAGCATGCAACAACAGCAGCCGCCACCAGACCATGATGATTTATCACTGAAGAACATGGCAACGGCCGCTCCGCAATGTGGGTTGTCCAATGTGTTTGGCGGGCCCATTGAAGGTGATGCTGGAAGCTACAGCCTGAATGGGACTGCTGCAGGCAGTAATCATGGGAGCAATGGGCAGAACGGAAGCAGCACAGCCATGAATGCCAGAGGGATGAACGTTGGAAGCGATAATGGAGTAGCCGGAAAGAACAAAGTTGGTGGTGGTAGTGGGAGCGGGTGTGGGACAGTGGATCAAAACCGTTTCACACAGAGAGAAGCCGCATTGACCAAATTTCGTCAGAAAAGGAAAGAAAGATGCTTTGAAAAGAAGGTCCGATATCAAAGCAGAAAGAAGCTGGCAGAGCAACGACCTCGGGTCCGTGGGCAATTTGTGCGACAGATAGTGTACGAACACACAAGCAGGGATGCAGATTGCTAA 2349 0.4679 MGSVPVNTDGTGNKGLAELNYHTRDEHKEVRDGVVGEGQGLSEEDESRINEVAEDVNNGCEGALVQAQVGLQKQQQQPQGPVVRWERFLPLRTLRVLLVENDDSTRHVVSALLRNCSYEVTATANGLQAWQILQDLTNHIDLILTEVVMPCLSGIGLLCEIMSHKTCNNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGIQTQKSAKSKSIEESDNNTGSNDEDDNGSVGLNVRDGSDNGSGTQSSWTKRVVEVDSPQPMSPWDQLADPPDSTCAQIIYPKPEAFGNEWVPITATKECQEQDEKLLDNVAMGKDLEIGAPRNPDLEHEYTSKKVSTNVTGTKQDNLPVLDLEKDNEQLDKGLVEFNREKPTGELRAQAADVTGSITNSTNPQVETGVFEDPSGLSNISEIKDKATSDIKVLPSLELSLKRLREVGDVGTATYDDRNVLRHSDLSAFSRYNTTSTANQAPTGNIGSCSPLDNSSEVLKTESMYSFPSNSNDNPPNQRSNGSSNNNDMGSTTKNVFTKPAVFNDKSASTSTAKCMNSSAFQPVQKGRTCPPQQVMPEKANDVVVNVGLAQPSGAQQQVQVQHHHHHHHHHVYSMQQQQPPPDHDDLSLKNMATAAPQCGLSNVFGGPIEGDAGSYSLNGTAAGSNHGSNGQNGSSTAMNARGMNVGSDNGVAGKNKVGGGSGSGCGTVDQNRFTQREAALTKFRQKRKERCFEKKVRYQSRKKLAEQRPRVRGQFVRQIVYEHTSRDADC* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01439 782 FunFam Two-component response regulator-like PRR37 94 248 - -
Eupl05g01439 782 Pfam CCT motif 728 770 IPR010402 GO:0005515
Eupl05g01439 782 Gene3D - 93 249 - -
Eupl05g01439 782 MobiDBLite consensus disorder prediction 675 695 - -
Eupl05g01439 782 Pfam Response regulator receiver domain 96 207 IPR001789 GO:0000160
Eupl05g01439 782 ProSiteProfiles CCT domain profile. 728 770 IPR010402 GO:0005515
Eupl05g01439 782 ProSiteProfiles Response regulatory domain profile. 95 213 IPR001789 GO:0000160
Eupl05g01439 782 SMART REC_2 94 209 IPR001789 GO:0000160
Eupl05g01439 782 MobiDBLite consensus disorder prediction 486 551 - -
Eupl05g01439 782 PANTHER TWO-COMPONENT RESPONSE REGULATOR 94 318 IPR045279 GO:0009736
Eupl05g01439 782 MobiDBLite consensus disorder prediction 605 635 - -
Eupl05g01439 782 MobiDBLite consensus disorder prediction 675 699 - -
Eupl05g01439 782 SUPERFAMILY CheY-like 93 218 IPR011006 -
Eupl05g01439 782 CDD psREC_PRR 96 199 - -
Eupl05g01439 782 MobiDBLite consensus disorder prediction 219 272 - -
Eupl05g01439 782 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01439 Eupl-Chr5 37654870 37673552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01439 170 772 Response Regulator Gene Family AT5G02810 47.673 1.62e-130 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Eupl05g01439 Response_reg 9.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01439 K12129 - ming:122086227 1096.26