Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01411 ATGTGGTTATCGTCTCGAATCACAAACGTCTGGTTTCAACGCCCGTTTTTTCTTATATCGTCGCGTATCCGCTTCAAACTCGAAAGCCCAGCCTCCCTATCTCAGGTCTCGCCATGTTTAAACGGCCACTGCGATGAGTTCTTACCATGGTTACAGCGAAAAGCCGGGGCTGAAATCTCATCAGTGCTTTCGATTGGAAATTCGGTCTACGGCAGGTCACTGTTTGCATCGAAGTTCATACAAGCTGGAGATTGCATACTGAAGGTTCCTTGCAGCGTTCAATTAACACCAGATAATGTCCTTCCGGAAATTAGTTCTCTATTAGGCGACAACATTGGAAATGTTGCACGGCTTGCTATTGTCATTTTAGTTGAGCAGAAAATGGGTCAGGATTCTGAATGGGCCCCCTACATAACTAGTCTTCCTCAGGTTGGGGAGCTGCATAGCACGATATTCTGGAGTAAGGAGGAAATGGAGATGGTTCAACAAAGCCCAATATATAAGGAAACTATCAATCAACAAGCTCAAATTGAAAAAGAATTTTTGGCAATTAGACCGGTTCTTGACCAATTTTGTCAACTTTTTGAAGATATTACATTTAAGGACTTCATGCATGCATACGCTTTAGTGGGATCTCGTGCATGGGGAAGTACAAAGGGCCTATCTTTGATTCCATTTGCAGATTTTCTAAATCATGATGGAGTTTCAGAGGCTGTCCTACTAAGTGACGAAGACAAACAAATCTCAGAGGTTATTGCTGATCGGGATTATGCTCCTGGTGAACAGGTTCTCATAAGATATGGGAAGTTTCCAAATTCTACACTCTTGCTGGACTTCGGTTTTACACTTCCACACAATATTTATGACCAGGTTCAGATTTGGGCTAGTGTACCTCAACATGATTCTTTACGGACGATGAAATTGGAACTTCTGCAAAAACATCGTATGCCAATCATCACAGATACCAATTGTTTTGGCTCTTCTGGGAATTCTTTCATAATCAAGGAAGTGAGATCTGCTAAGGGGAAAGGGAAGGGCATTCCACAATCACTCCGTGCATTTGCTCGTGTTTTATGTGCCACCTCTCCTCAAGACCTGAAAGAATTGGAAACGGAAGCAATACAGAATGATGGCCGACTGGCTCGACGTCCTTTAAAGAACTTGGGCAGGGAGATCCAAGCACATCAGATCTTGCGCTCACGAATTATGCACTTGATTCAGGAATATGATGCATCCATTAAGTCACTAGGGCCAGTCAACTCTCCCTCCATTGGTGGACGACTTGCTTGCCGAAGGCAAATGGCACGAGATCTGCTTACTGGTGAGCTCCGTGTCCTGAAATCTGCATCTGCATGGCTGAATAACTACTGTGCGTCCTTATCTACGGGAAACGACCATTCTTGA 1404 0.4395 MWLSSRITNVWFQRPFFLISSRIRFKLESPASLSQVSPCLNGHCDEFLPWLQRKAGAEISSVLSIGNSVYGRSLFASKFIQAGDCILKVPCSVQLTPDNVLPEISSLLGDNIGNVARLAIVILVEQKMGQDSEWAPYITSLPQVGELHSTIFWSKEEMEMVQQSPIYKETINQQAQIEKEFLAIRPVLDQFCQLFEDITFKDFMHAYALVGSRAWGSTKGLSLIPFADFLNHDGVSEAVLLSDEDKQISEVIADRDYAPGEQVLIRYGKFPNSTLLLDFGFTLPHNIYDQVQIWASVPQHDSLRTMKLELLQKHRMPIITDTNCFGSSGNSFIIKEVRSAKGKGKGIPQSLRAFARVLCATSPQDLKELETEAIQNDGRLARRPLKNLGREIQAHQILRSRIMHLIQEYDASIKSLGPVNSPSIGGRLACRRQMARDLLTGELRVLKSASAWLNNYCASLSTGNDHS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01411 467 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 44 412 - -
Eupl05g01411 467 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 40 281 - -
Eupl05g01411 467 Pfam Rubisco LSMT substrate-binding 298 446 IPR015353 -
Eupl05g01411 467 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 302 459 IPR036464 -
Eupl05g01411 467 CDD SET_RBCMT 68 282 IPR044431 GO:0016279|GO:0018022
Eupl05g01411 467 Gene3D set domain protein methyltransferase, domain 1 41 281 - -
Eupl05g01411 467 Pfam SET domain 71 268 IPR001214 GO:0005515
Eupl05g01411 467 ProSiteProfiles SET domain profile. 55 268 IPR001214 GO:0005515
Eupl05g01411 467 Gene3D - 283 459 IPR036464 -
Eupl05g01411 467 SUPERFAMILY SET domain 44 286 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01411 Eupl-Chr5 37271527 37296936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01411 47 261 NAC Transcription Factor Family AT3G56570 25.110 3.70e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl05g01411 SET 4.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01411 K19199 - nnu:104594687 669.463