Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01388 ATGGGGACAGTCCACGGCCGTTGCTTCAGTGACCCTCGTAAGAGTCGGAACGGCAATAACAGTTCTTTTCCCGATCAAACGCCAGTTACAGCTTTTAAAAATCACCTGCCAAATCAGACAGCTCAGATTCCGGACGCAACGAAGGCGAAGATGTCATCGTTGCCGTACTGTCACGTCGACAGCAGCTTGAGAGCCCTGGCCGGACAGGCCGAGGGTTTCGGCCGGTTCGCCATCGGAGGCCTCCACGGACCGCTTTATCACGTCACCACTTTAGCAGATGATGGGCCTGGATCACTCCGTGATGGATGCCGTCGAAAAGAACCATTCTGGATTGTCTTTGAAGTTTCGGGCACCATTCAACTTTCGTCTTACTTGAATGTGTCGTCCTATAAGACAATTGATGGCCGGGGCCAGCGCATAAAACTCACCGGAAAGGGTCTACGGCTGAAGGAATGCGAACATGTTATAATCTGTAATCTGGAGTTCGAAGGTGGTAGAGGACATGATGTTGATGGCATTCAAATAAAACCCAAGTCAAAGCACATATGGATAGACCGTTGCAGCCTGCGTGATTATGATGATGGGCTAATAGATATCACGCGTGAAAGCACAGATATTACTGTTTCTAGATGCCACTTTTCAAAGCATGACAAGACGATGCTTATTGGAGCAGACTCCACTCACATTGGTGATAGATGCATCCGGGTGACCATTCACCATTGCTTTTTCGATGGGACCCGACAGCGACACCCTCGTGTTAGATTCGGGAAGGTTCATATATACAACAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCTAGTGTAGAATCACAGATATATTCTCAGTGCAATATATATGAAGCAGGAGAGAAGAAGGGGACATTTAAATATCTCCCAGAGAAGGCAACTGACAAAGAAGAGGTCTCGTCTGGATGCATAAGATCTGAAGGGGACATTTTCCTGAAGGGAGCTCAAGCATGTTCAACAAAAGGGGTGGGTGAGGAAAGCATGTTCCATCCAAGTGAATACTACCCGACATGGACAACGGAAGCTCCCTCGGAGGCTCTGAAAGAGGTTCTCAAACTTTGTACAGGGTGGCAGTCCATTCCAAGGCCGGCAGAGCAGACGGTGGTTGCATGA 1146 0.4825 MGTVHGRCFSDPRKSRNGNNSSFPDQTPVTAFKNHLPNQTAQIPDATKAKMSSLPYCHVDSSLRALAGQAEGFGRFAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPFWIVFEVSGTIQLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSKHDKTMLIGADSTHIGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHIYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKGTFKYLPEKATDKEEVSSGCIRSEGDIFLKGAQACSTKGVGEESMFHPSEYYPTWTTEAPSEALKEVLKLCTGWQSIPRPAEQTVVA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01388 381 MobiDBLite consensus disorder prediction 13 27 - -
Eupl05g01388 381 PANTHER PECTATE LYASE 18-RELATED 58 339 IPR045032 GO:0030570
Eupl05g01388 381 SMART amb_all 96 294 IPR002022 -
Eupl05g01388 381 Pfam Pectate lyase 124 287 IPR002022 -
Eupl05g01388 381 PRINTS Pollen allergen Amb family signature 69 86 IPR018082 -
Eupl05g01388 381 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Eupl05g01388 381 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Eupl05g01388 381 MobiDBLite consensus disorder prediction 1 27 - -
Eupl05g01388 381 Gene3D - 56 363 IPR012334 -
Eupl05g01388 381 SUPERFAMILY Pectin lyase-like 67 371 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01388 Eupl-Chr5 36919102 36928343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01388 91 379 Polysaccharide Lyase AT3G55140 77.509 5.24e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01388 K01728 - nnu:104594663 659.448