LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g01359	ATGGCTCCTCCCTCTAAAGTTGCAAAGAAGACTGATGGAAAGGCACAGGCCTTGAAGGTCGCTAAAGCGGTGAAATCAGGTACATCAACCTTAAAGAAGAAGGCCAAGAAGATCCGAACATCGGTCACATTCCATCGCCCAAAGACATTGAAGAAAGAGAGGAACCCCAAGTACCCTCGCATTAGTGCACCTCCAAGGAACAAACTTGACCACTATCAGATACTGAAATACCCACTAACAACTGAGTCTGCCATGAAGAAGATTGAAGACAACAACACTCTTGTATTCATTGTCGACATTCGTGCAGACAAGAAGAAGATCAAGGCTGCAGTCAAGAAGATGTACGATATTCAGACCAAGAAAGTGAATACCTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTTAAGCTGACTCCAGATTTTGATGCCTTGGATGTTGCAAACAAGATCGGGATAATCTAG	465	0.4409	MAPPSKVAKKTDGKAQALKVAKAVKSGTSTLKKKAKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVKLTPDFDALDVANKIGII*	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g01359	154	PANTHER	60S RIBOSOMAL PROTEIN L23A	5	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Eupl05g01359	154	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	71	147	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Eupl05g01359	154	Pfam	Ribosomal protein L23, N-terminal domain	13	64	IPR005633	-
	Eupl05g01359	154	Hamap	50S ribosomal protein L23 [rplW].	74	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Eupl05g01359	154	Pfam	Ribosomal protein L23	74	137	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Eupl05g01359	154	ProSitePatterns	Ribosomal protein L23 signature.	132	147	IPR001014	GO:0019843
	Eupl05g01359	154	FunFam	60S ribosomal protein L23a	32	154	-	-
	Eupl05g01359	154	Gene3D	-	35	154	IPR012677	-
	Eupl05g01359	154	NCBIfam	50S ribosomal protein L23	78	154	IPR019985	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g01359	Eupl-Chr5	36563257	36566563	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g01359	37	154	Cytoplasmic Ribosomal Protein Gene Family	AT3G55280	91.525	2.74e-67	199

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g01359	K02893		-	aof:109820680	278.1