Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01354 ATGTCTTCAAGTCCTACATCACCTCCAGACCTCGTACCATCAAAATGGAACCCATATGTAATATCCTTGGTCGGCACAATCTGCACCGTCTTCCTCTTCTTTAGTTATTACAGGATCCTCAAAAGACACTGCTTTTCTTTTGGAGGAGCTCCCGTCTTCGCAAACCGGATTCAAAGGCGGCTTCTGAATGAATCCAACCCAGATGACCCTTCACTACAGTTCCACAGCCGAGGGCTGGATTCCTCAATTTTATACTCCCTGCCTGCCATTCAATACAGGAAAAAGTCCGACGGTGAAATCAGCCAAGGCGACACGGTCTGTGCAGTTTGTTTGGGAGAATTTGTAGAAGGGGAATGGCTAAGATTTCTACCTAACTGCACCCATTCATTCCATATTTCTTGCATCGACACTTGGTTTCAGTCCCACTCCAATTGCCCACTCTGCAGATCTCACGTCGTATACAATGTTACTGGTCACCCTGGTTACTCCGTTTCCATGTTCTCTTTGTTAGAGACACTTAGGAGGGAAGATGCTATCCTCCGAGAAAATGCATCACGGCACCACGTTCTTCAGACCGAAGCCATGCAGAATTCAACAGTCAGGCAGGGCCCAACAAATGCCAATCAGCTCAACCCAGGCTTGGATGACTCTGCTCGTAACGTGGATTCCTCCAATGTACCAGGGAACAATCGACGAAATGTGGAAGGACAACATATGGGTGTGGGTGCTTCCATAGAAGAAATACAGGAACCACCCTAA 759 0.4743 MSSSPTSPPDLVPSKWNPYVISLVGTICTVFLFFSYYRILKRHCFSFGGAPVFANRIQRRLLNESNPDDPSLQFHSRGLDSSILYSLPAIQYRKKSDGEISQGDTVCAVCLGEFVEGEWLRFLPNCTHSFHISCIDTWFQSHSNCPLCRSHVVYNVTGHPGYSVSMFSLLETLRREDAILRENASRHHVLQTEAMQNSTVRQGPTNANQLNPGLDDSARNVDSSNVPGNNRRNVEGQHMGVGASIEEIQEPP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01354 252 SMART ring_2 107 148 IPR001841 -
Eupl05g01354 252 FunFam E3 ubiquitin-protein ligase ATL6 69 155 - -
Eupl05g01354 252 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Eupl05g01354 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Eupl05g01354 252 MobiDBLite consensus disorder prediction 195 252 - -
Eupl05g01354 252 CDD RING-H2_EL5-like 107 149 - -
Eupl05g01354 252 PANTHER RING-H2 FINGER PROTEIN ATL16 13 193 IPR044600 GO:0016567|GO:0016740
Eupl05g01354 252 SUPERFAMILY RING/U-box 99 158 - -
Eupl05g01354 252 MobiDBLite consensus disorder prediction 195 232 - -
Eupl05g01354 252 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01354 Eupl-Chr5 36483706 36484721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01354 21 152 C3H Transcription Factor Family AT1G04360 37.589 9.88e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01354 - - msin:131253883 224.942