Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01349 ATGGTGCAGGAAGAAACTCGTAAGGGTCCGTGGACTGAGCAGGAGGACCTTCAACTGGTCTGCTTCGTAGGCTTATTCGGAGAACGACGATGGGATTTCATAGCAAAAGTTTCAGGTTTGAACAGAACAGGGAAGAGTTGCAGGTTACGATGGGTTAATTACCTGCACCCCGGTCTCAAACGAGGGAGGATGACACCCCAGGAAGAGCGGCTCGTGCTCGAACTCCATGCTCGATGGGGAAATAGGTGGTCGAGAATTGCTCGAAAATTACCGGGCCGAACGGATAATGAGATAAAGAATTATTGGAGAACCCATATGAGGAAGAAGGCACAAGAGAGGAAAAAGGCGGCTTCGGTGTCGCCGAACAATCATAATCTGGTCGATTCATCGTCGAAAGGTAAGATAGAAGAAGGAAGCTTGCATGATAAAGGAGGTAGTAGTGGTGATGATCATGATATAGTTGTGAGAGGAGAGGAAAGTGAAGAAGCAGGTGCTCAAAAAGGGTACTCCATGGATCAAATATGGAATGAAATTGCTTCATCAGAAGAGGTGACTAGTACTGGACAAGTTCATGAGGGATGTTATAAGGAAGAAGGGTACAGTTTCTCTTCTCCTCCTCCAGTAGCTTCTCCTGATCTGTGGGACTATTGTTCTGACTCACTGTGGAGGATGGATGAAGAAGAGATTAAGATGTTGATTCCCATGAATGATCTTTTTGCTTCCAACTATGAATATAGCAGAGAGTAG 747 0.4565 MVQEETRKGPWTEQEDLQLVCFVGLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMTPQEERLVLELHARWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKKAASVSPNNHNLVDSSSKGKIEEGSLHDKGGSSGDDHDIVVRGEESEEAGAQKGYSMDQIWNEIASSEEVTSTGQVHEGCYKEEGYSFSSPPPVASPDLWDYCSDSLWRMDEEEIKMLIPMNDLFASNYEYSRE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01349 248 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Eupl05g01349 248 FunFam Myb transcription factor 8 60 - -
Eupl05g01349 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Eupl05g01349 248 MobiDBLite consensus disorder prediction 130 151 - -
Eupl05g01349 248 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Eupl05g01349 248 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 137 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl05g01349 248 Gene3D - 8 60 - -
Eupl05g01349 248 FunFam MYB transcription factor 63 129 - -
Eupl05g01349 248 MobiDBLite consensus disorder prediction 106 151 - -
Eupl05g01349 248 CDD SANT 63 106 IPR001005 -
Eupl05g01349 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Eupl05g01349 248 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Eupl05g01349 248 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Eupl05g01349 248 CDD SANT 10 55 IPR001005 -
Eupl05g01349 248 Gene3D - 63 134 - -
Eupl05g01349 248 SUPERFAMILY Homeodomain-like 7 102 IPR009057 -
Eupl05g01349 248 SMART sant 60 108 IPR001005 -
Eupl05g01349 248 SMART sant 7 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01349 Eupl-Chr5 36430121 36431333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01349 1 245 MYB Transcription Factor Family AT5G59780 57.551 3.26e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g01349 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01349 K09422 - vvi:100260318 328.946