Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01335 ATGAAGAGAAGCAGAGGAGAGATAGAGAGCATATCAACCATGGCCAAGTGCTTGATGTTGCTCTCTCAAGGAGGAGGAGAGACCGAGTCGCGGATTCACTCAGCGAGTCGTGTATTCGAGTGCAAGACTTGTAATCGTCAATTCCCATCGTTTCAAGCACTGGGAGGCCACCGAGCGAGTCACAAGAAACCGAGATTGATGGGAGGAGATCCAAATCTTCAGAGCCAGAGCTTACAGTTGAAACCTAAGACACACGAGTGTTCGATATGCGGGTTAGAGTTCGCGATTGGGCAAGCGCTGGGTGGTCACATGAGGAGGCATAGGAGCATCACGAGCGAAGCGTTGTCTCCTCCTTCTCCTCCGACTCCTACTGCACGAGTACCATTAATAAAAAAATCGAACAGTAGGAGGATTTTGTGCTTGGATTTGAACTTGACTCCTTTGGAGAATGATTTGGAGTTTCGTTTCAGAAATGAGTTTTCAGAGAAGATTACTCCATCCATGGTTGATTGTTTTATCTGA 522 0.4713 MKRSRGEIESISTMAKCLMLLSQGGGETESRIHSASRVFECKTCNRQFPSFQALGGHRASHKKPRLMGGDPNLQSQSLQLKPKTHECSICGLEFAIGQALGGHMRRHRSITSEALSPPSPPTPTARVPLIKKSNSRRILCLDLNLTPLENDLEFRFRNEFSEKITPSMVDCFI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01335 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Eupl05g01335 173 Pfam C2H2-type zinc finger 85 109 - -
Eupl05g01335 173 Pfam C2H2-type zinc finger 38 64 - -
Eupl05g01335 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Eupl05g01335 173 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Eupl05g01335 173 SMART c2h2final6 39 61 IPR013087 -
Eupl05g01335 173 SMART c2h2final6 85 107 IPR013087 -
Eupl05g01335 173 PANTHER ZINC FINGER PROTEIN ZAT5 9 152 - -
Eupl05g01335 173 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Eupl05g01335 173 SUPERFAMILY beta-beta-alpha zinc fingers 37 107 IPR036236 -
Eupl05g01335 173 Gene3D Classic Zinc Finger 37 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01335 Eupl-Chr5 36240478 36241575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01335 1 169 C2H2 Transcription Factor Family AT2G37430 48.889 9.68e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01335 zf-C2H2_6 6.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01335 - - nnu:104594613 219.55