Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01328 ATGGCGTTCGCTTCTGGTTTTCGTCGCGTTCTGAGCGGATCTTCAACTGCTTCGTCCCTTTTGCAAGGGCGGTTCACTCCAGTCCGTCAAAACTCTACCTTGACAACTCCAAAGCTTTTCGTCAGCGGCCTTTCGAGGTTAACCACAGACGAAAAGCTGAAAGAGGCATTTTCTCCTTTTGGTCAGCTTCTTGAAGCAAACGTTATAACTGATAGAGCCTCAGGAAGGTCCAAGGGATTTGGTTTTGTCAGGTATGCAACCATAGAAGAGGCTGAGAAGGCACGAGAGGGGATGAATGCGAAATTCCTGGATGGGTGGGTTATTTTTGTTGATCCCGCAAAACCCAGAGAGCCAAGACCACCACCTCGGCCAGAGCCGGAGCCTTTGGAATCTGGTTTCAGGACAAACAAGACTATTGGATGGTGTGGGTGA 432 0.4954 MAFASGFRRVLSGSSTASSLLQGRFTPVRQNSTLTTPKLFVSGLSRLTTDEKLKEAFSPFGQLLEANVITDRASGRSKGFGFVRYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPRPEPEPLESGFRTNKTIGWCG* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01328 143 FunFam RNA binding protein 24 137 - -
Eupl05g01328 143 PANTHER NUCLEOLAR PROTEIN 8 18 142 - -
Eupl05g01328 143 Gene3D - 14 122 IPR012677 -
Eupl05g01328 143 SMART rrm1_1 38 111 IPR000504 GO:0003723
Eupl05g01328 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Eupl05g01328 143 MobiDBLite consensus disorder prediction 113 143 - -
Eupl05g01328 143 SUPERFAMILY RNA-binding domain, RBD 35 129 IPR035979 GO:0003676
Eupl05g01328 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01328 Eupl-Chr5 36157368 36160141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01328 39 139 Eukaryotic Initiation Factors Gene Family AT1G34140 32.673 2.39e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01328 - - nnu:104599304 224.557